Wall clock time and date at job start Thu Apr 9 2020 14:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30173 * 126.80630 * 2 1 4 4 O 1.20915 * 111.60588 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.57016 * 359.75694 * 4 3 2 6 6 C 1.35451 * 106.44520 * 0.38190 * 5 4 3 7 7 C 1.50704 * 128.00958 * 179.90828 * 6 5 4 8 8 N 1.46895 * 109.47030 * 259.68216 * 7 6 5 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47109 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99876 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99989 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47285 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47233 * 119.99722 * 14 12 10 17 17 H 1.48500 * 109.46790 * 239.99650 * 14 12 10 18 18 H 1.08996 * 109.47090 * 269.98192 * 1 2 3 19 19 H 1.09005 * 109.46866 * 29.97663 * 1 2 3 20 20 H 1.09000 * 109.46966 * 149.97554 * 1 2 3 21 21 H 1.08002 * 126.77868 * 180.28905 * 5 4 3 22 22 H 1.08996 * 109.46908 * 139.68034 * 7 6 5 23 23 H 1.09002 * 109.46622 * 19.68207 * 7 6 5 24 24 H 1.00899 * 111.00672 * 56.04735 * 8 7 6 25 25 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 26 26 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 27 27 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6025 -0.6069 0.0044 6 6 2.3539 -1.1321 -0.0004 7 6 1.9590 -2.5865 0.0001 8 7 1.5974 -2.9962 -1.3634 9 6 1.2065 -4.4118 -1.4016 10 6 0.8428 -4.7946 -2.8130 11 1 0.8971 -4.0599 -3.6029 12 6 0.4408 -6.0827 -3.0961 13 7 0.3753 -6.9774 -2.1344 14 14 -0.0093 -6.5575 -4.8458 15 1 0.1473 -5.3782 -5.7345 16 1 0.8853 -7.6488 -5.3083 17 1 -1.4190 -7.0227 -4.8852 18 1 -0.3633 -0.0003 1.0276 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5142 21 1 4.5339 -1.1535 0.0095 22 1 1.1046 -2.7306 0.6614 23 1 2.7960 -3.1901 0.3510 24 1 2.3513 -2.8121 -2.0083 25 1 2.0385 -5.0278 -1.0606 26 1 0.3470 -4.5690 -0.7499 27 1 0.0928 -7.8837 -2.3336 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398022519.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:38 Heat of formation + Delta-G solvation = 51.527983 kcal Electronic energy + Delta-G solvation = -11857.746722 eV Core-core repulsion = 9618.684220 eV Total energy + Delta-G solvation = -2239.062502 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.68581 -36.14778 -34.12598 -32.58783 -31.34527 -28.46774 -27.43759 -24.68865 -21.62997 -21.10476 -20.92401 -17.34829 -17.29973 -16.38557 -15.07973 -14.59686 -14.04487 -13.56373 -13.43692 -13.02481 -12.69953 -12.25794 -12.08046 -11.54245 -11.27938 -10.93234 -10.72454 -10.65934 -10.06773 -9.59114 -9.32757 -9.14289 -8.53192 -7.40613 -6.08092 -4.10213 1.69727 2.45386 3.28494 3.36061 3.41277 3.46723 4.38724 4.43629 4.80499 5.16234 5.28044 5.29098 5.57485 5.69971 5.73867 5.90030 5.95352 6.15521 6.21216 6.44972 7.14733 7.33129 7.72492 8.05490 8.29140 8.48095 8.51703 8.99059 9.55178 11.03022 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.063009 B = 0.006945 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.273072 B = 4030.630588 C = 4088.376021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.036 3.964 3 N -0.378 5.378 4 O 0.089 5.911 5 C -0.069 4.069 6 C -0.180 4.180 7 C 0.131 3.869 8 N -0.684 5.684 9 C 0.193 3.807 10 C -0.514 4.514 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.283 1.283 18 H 0.074 0.926 19 H 0.070 0.930 20 H 0.096 0.904 21 H 0.212 0.788 22 H 0.079 0.921 23 H 0.033 0.967 24 H 0.330 0.670 25 H -0.012 1.012 26 H 0.030 0.970 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 9.644 4.701 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 N -0.086 5.086 4 O 0.026 5.974 5 C -0.151 4.151 6 C -0.184 4.184 7 C 0.001 3.999 8 N -0.315 5.315 9 C 0.067 3.933 10 C -0.553 4.553 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.210 1.210 18 H 0.092 0.908 19 H 0.089 0.911 20 H 0.114 0.886 21 H 0.229 0.771 22 H 0.097 0.903 23 H 0.051 0.949 24 H 0.147 0.853 25 H 0.006 0.994 26 H 0.048 0.952 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.186 10.988 4.788 12.402 hybrid contribution 0.638 -1.771 -0.783 2.039 sum 3.824 9.217 4.005 10.752 Atomic orbital electron populations 1.20197 0.85963 1.04451 1.02837 1.23520 0.99118 0.88197 1.01479 1.73786 0.89536 1.24446 1.20803 1.84757 1.21626 1.23065 1.67989 1.25768 1.00795 0.83620 1.04949 1.21496 0.91874 0.98264 1.06800 1.20140 0.99242 0.86406 0.94136 1.60703 1.42530 1.24597 1.03654 1.19597 0.95170 0.80694 0.97850 1.21202 1.44825 0.95454 0.93821 0.91879 1.24984 0.95634 0.96394 0.97512 1.69968 1.47996 1.03784 1.31965 0.86421 0.78053 0.78415 0.84411 1.19635 1.21070 1.20957 0.90766 0.91090 0.88560 0.77096 0.90300 0.94888 0.85327 0.99419 0.95210 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.39 36.01 0.37 -0.68 15 2 C 0.04 0.57 7.33 -82.10 -0.60 -0.03 15 3 N -0.38 -6.13 12.07 33.42 0.40 -5.73 15 4 O 0.09 1.30 11.20 17.19 0.19 1.49 15 5 C -0.07 -0.90 12.26 29.74 0.36 -0.53 15 6 C -0.18 -2.77 5.84 -104.42 -0.61 -3.38 15 7 C 0.13 2.22 6.17 -4.98 -0.03 2.19 15 8 N -0.68 -14.17 6.48 -116.34 -0.75 -14.92 15 9 C 0.19 4.90 5.44 -4.97 -0.03 4.87 15 10 C -0.51 -14.31 9.32 -34.44 -0.32 -14.64 15 11 H 0.06 1.74 7.81 -52.48 -0.41 1.33 15 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 13 N -0.90 -26.38 13.29 55.43 0.74 -25.64 15 14 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 15 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 18 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 21 H 0.21 1.87 8.06 -52.49 -0.42 1.45 15 22 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.33 6.65 8.71 -39.29 -0.34 6.30 15 25 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 15 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 245.99 15.07 3.71 3.71 Total: -1.00 -30.43 245.99 -4.95 -35.38 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.27 Total: 0.03 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.95 Total: -10.71 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.39 Total: -46.30 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.43 -4.95 -35.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398022519.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.906 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds