Wall clock time and date at job start Thu Apr 9 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47177 * 240.00160 * 3 2 1 5 5 H 1.48496 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46971 * 120.00323 * 3 2 1 7 7 C 1.37875 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.63492 * 300.00235 * 9 7 2 11 11 O 1.20833 * 119.99655 * 239.57421 * 10 9 7 12 12 O 1.34222 * 120.00432 * 59.85688 * 10 9 7 13 13 C 1.53022 * 109.81324 * 60.53003 * 9 7 2 14 14 C 1.50066 * 110.14890 * 70.35585 * 13 9 7 15 15 C 1.29449 * 124.07477 * 17.12564 * 14 13 9 16 16 C 1.50062 * 124.07492 * 359.53207 * 15 14 13 17 17 C 1.53021 * 110.14756 * 17.13140 * 16 15 14 18 18 H 0.97000 * 119.99590 * 359.97438 * 1 2 3 19 19 H 0.96701 * 117.00458 * 179.72178 * 12 10 9 20 20 H 1.09003 * 109.35455 * 190.55989 * 13 9 7 21 21 H 1.08997 * 109.35902 * 310.14266 * 13 9 7 22 22 H 1.07996 * 117.96122 * 197.10379 * 14 13 9 23 23 H 1.07995 * 117.96084 * 179.51099 * 15 14 13 24 24 H 1.08997 * 109.35978 * 256.92484 * 16 15 14 25 25 H 1.09003 * 109.35656 * 137.33807 * 16 15 14 26 26 H 1.09005 * 109.64091 * 190.87801 * 17 16 15 27 27 H 1.08998 * 109.81896 * 70.35229 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 0.3836 -2.5832 1.2289 11 8 0.5403 -3.4844 2.0184 12 8 -0.5667 -1.6601 1.4442 13 6 0.3778 -2.5940 -1.2536 14 6 1.2373 -2.7780 -2.4699 15 6 2.4740 -3.1588 -2.4332 16 6 3.2239 -3.4597 -1.1687 17 6 2.2442 -3.6680 -0.0118 18 1 -0.4849 0.8401 0.0004 19 1 -1.1007 -1.7580 2.2444 20 1 -0.2999 -3.4424 -1.1583 21 1 -0.2049 -1.6788 -1.3580 22 1 0.7966 -2.5809 -3.4359 23 1 2.9985 -3.2670 -3.3710 24 1 3.8870 -2.6268 -0.9350 25 1 3.8173 -4.3635 -1.3069 26 1 2.7907 -3.6935 0.9310 27 1 1.7052 -4.6055 -0.1483 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575510917.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:44 Heat of formation + Delta-G solvation = -91.954290 kcal Electronic energy + Delta-G solvation = -13072.123155 eV Core-core repulsion = 10794.546044 eV Total energy + Delta-G solvation = -2277.577111 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.08628 -38.72753 -36.46817 -34.58136 -31.88377 -31.19257 -27.08625 -24.70787 -23.70647 -21.24446 -19.43582 -18.48077 -17.55959 -16.89172 -16.56171 -15.84618 -15.48630 -14.78970 -14.41359 -13.82225 -13.55953 -13.24730 -12.86996 -12.75001 -12.73801 -12.37103 -12.05670 -11.89363 -11.54625 -11.09553 -10.83307 -10.73757 -10.27780 -9.50956 -7.96012 -6.17856 1.47491 1.49109 1.54476 1.75257 1.85400 2.47931 2.95724 3.27765 4.16935 4.18287 4.50702 4.76211 4.79852 4.89841 4.96594 5.03731 5.16184 5.32554 5.40722 5.50345 5.73101 5.94723 6.05902 6.13536 6.30109 6.44183 6.78516 7.47313 7.67923 8.97809 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.020564 C = 0.015312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.309904 B = 1361.250746 C = 1828.177176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.071 3.929 10 C 0.484 3.516 11 O -0.604 6.604 12 O -0.450 6.450 13 C -0.076 4.076 14 C -0.144 4.144 15 C -0.160 4.160 16 C -0.072 4.072 17 C -0.091 4.091 18 H 0.262 0.738 19 H 0.367 0.633 20 H 0.033 0.967 21 H 0.087 0.913 22 H 0.105 0.895 23 H 0.118 0.882 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -2.030 -3.484 4.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.082 0.918 9 C 0.070 3.930 10 C 0.332 3.668 11 O -0.501 6.501 12 O -0.254 6.254 13 C -0.113 4.113 14 C -0.162 4.162 15 C -0.178 4.178 16 C -0.108 4.108 17 C -0.129 4.129 18 H 0.072 0.928 19 H 0.222 0.778 20 H 0.051 0.949 21 H 0.105 0.895 22 H 0.123 0.877 23 H 0.136 0.864 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.896 -2.062 -3.667 4.614 hybrid contribution -0.190 0.895 0.892 1.277 sum 1.706 -1.167 -2.775 3.461 Atomic orbital electron populations 1.69918 1.06037 1.26752 1.45250 1.25595 0.95719 1.01509 0.94819 0.85810 0.78598 0.79960 0.78417 1.19649 1.20993 1.20772 1.20967 0.92925 0.89163 1.53283 0.91849 1.18225 0.91310 0.96170 0.87306 1.25487 0.77201 0.75736 0.88376 1.90473 1.71485 1.37688 1.50472 1.85544 1.44619 1.50179 1.45014 1.20382 0.97176 1.00648 0.93110 1.21979 0.96651 0.99740 0.97800 1.22034 0.95701 1.01612 0.98463 1.20311 0.97079 1.01225 0.92209 1.21388 0.97116 0.96104 0.98249 0.92800 0.77802 0.94902 0.89455 0.87715 0.86415 0.91261 0.90029 0.93764 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.58 8.09 21.45 0.17 -43.40 15 2 C 0.03 1.44 5.05 84.65 0.43 1.86 15 3 Si 0.95 41.16 29.54 68.60 2.03 43.19 15 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.53 -26.92 6.89 25.60 0.18 -26.74 15 8 H 0.06 3.22 6.27 -2.91 -0.02 3.20 15 9 C 0.07 3.47 0.48 -53.54 -0.03 3.44 15 10 C 0.48 24.71 6.87 71.23 0.49 25.20 15 11 O -0.60 -32.18 16.66 21.94 0.37 -31.81 15 12 O -0.45 -21.60 9.81 -51.34 -0.50 -22.10 15 13 C -0.08 -3.45 4.71 29.66 0.14 -3.31 15 14 C -0.14 -5.63 9.54 27.03 0.26 -5.37 15 15 C -0.16 -5.72 9.62 27.03 0.26 -5.46 15 16 C -0.07 -2.61 5.59 29.66 0.17 -2.45 15 17 C -0.09 -3.94 4.30 30.73 0.13 -3.81 15 18 H 0.26 13.07 8.31 -92.71 -0.77 12.30 15 19 H 0.37 14.18 9.10 -74.06 -0.67 13.51 15 20 H 0.03 1.45 8.10 -2.39 -0.02 1.43 15 21 H 0.09 4.40 5.94 -2.39 -0.01 4.38 15 22 H 0.10 3.62 8.06 -2.91 -0.02 3.60 15 23 H 0.12 3.44 8.06 -2.91 -0.02 3.41 15 24 H 0.07 2.64 6.59 -2.39 -0.02 2.62 15 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.04 1.98 7.91 -2.38 -0.02 1.97 15 27 H 0.05 1.93 8.13 -2.39 -0.02 1.91 15 Total: -1.00 -58.57 223.06 4.59 -53.99 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.50 Total: 16.78 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 2.02 Total: -16.64 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.17 Total: -43.40 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.14 Total: -53.91 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -58.57 4.59 -53.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575510917.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.969 kcal (2) G-P(sol) polarization free energy of solvation -58.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds