Wall clock time and date at job start Thu Apr 9 2020 14:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00482 * 2 1 4 4 H 1.48500 * 109.47363 * 240.00275 * 3 2 1 5 5 H 1.48506 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47322 * 119.99711 * 3 2 1 7 7 C 1.37884 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.50694 * 110.67489 * 56.76590 * 9 7 2 11 11 O 1.20831 * 120.00091 * 123.23553 * 10 9 7 12 12 O 1.34236 * 119.99988 * 303.23324 * 10 9 7 13 13 C 1.54326 * 110.25608 * 293.35664 * 9 7 2 14 14 C 1.54270 * 104.46612 * 278.97782 * 13 9 7 15 15 H 1.09002 * 117.41500 * 117.17000 * 14 13 9 16 16 C 1.52999 * 118.68445 * 272.98240 * 14 13 9 17 17 C 1.53000 * 60.37711 * 93.34448 * 16 14 13 18 18 H 1.09000 * 119.75259 * 111.12703 * 17 16 14 19 19 C 1.54271 * 118.19743 * 266.37669 * 17 16 14 20 20 H 0.97003 * 119.99781 * 0.02562 * 1 2 3 21 21 H 0.96696 * 117.00023 * 180.02562 * 12 10 9 22 22 H 1.09002 * 109.67722 * 160.54949 * 13 9 7 23 23 H 1.09002 * 111.04220 * 38.08617 * 13 9 7 24 24 H 1.09010 * 117.45722 * 200.94272 * 16 14 13 25 25 H 1.08997 * 117.46363 * 345.74505 * 16 14 13 26 26 H 1.08993 * 110.48418 * 206.47064 * 19 17 16 27 27 H 1.08996 * 110.48262 * 328.98575 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 0.3161 -2.5727 -1.1814 11 8 0.4032 -3.4883 -1.9651 12 8 -0.6134 -1.6212 -1.3616 13 6 0.4861 -2.6757 1.3271 14 6 1.5496 -3.1923 2.3181 15 1 1.7818 -2.5637 3.1778 16 6 1.8067 -4.6983 2.4005 17 6 2.6632 -3.8345 1.4725 18 1 3.7158 -3.6717 1.7037 19 6 2.2307 -3.6988 -0.0022 20 1 -0.4850 0.8401 -0.0004 21 1 -1.1903 -1.7114 -2.1324 22 1 -0.3063 -3.4132 1.1993 23 1 0.0737 -1.7269 1.6703 24 1 2.2758 -5.0792 3.3077 25 1 1.0740 -5.3593 1.9377 26 1 3.0928 -3.4870 -0.6345 27 1 1.7267 -4.6055 -0.3368 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575511085.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:47 Heat of formation + Delta-G solvation = -58.675226 kcal Electronic energy + Delta-G solvation = -12979.200792 eV Core-core repulsion = 10703.066770 eV Total energy + Delta-G solvation = -2276.134022 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.39300 -37.65702 -34.46352 -33.19099 -30.41125 -27.18560 -25.11425 -23.11672 -20.49068 -19.08467 -18.59664 -16.89308 -16.05708 -15.37224 -14.60086 -14.31760 -13.90121 -12.73318 -12.48856 -12.20599 -11.76339 -11.20747 -10.93892 -10.76820 -10.52206 -10.41678 -10.31535 -9.91356 -9.68449 -9.48338 -9.27053 -8.91518 -8.69381 -8.26939 -6.03486 -4.20642 3.27254 3.31701 3.34582 3.80923 4.34821 4.44882 4.78321 5.20385 5.44648 5.63167 5.72463 6.08894 6.18140 6.31532 6.49935 6.65545 6.79246 6.83802 6.97882 7.05120 7.09774 7.27743 7.63713 7.82959 7.98762 8.18175 8.74871 9.42894 9.58730 10.91956 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.033488 B = 0.017758 C = 0.013864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.930192 B = 1576.385296 C = 2019.180179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.082 3.918 10 C 0.491 3.509 11 O -0.586 6.586 12 O -0.435 6.435 13 C -0.068 4.068 14 C -0.144 4.144 15 H 0.099 0.901 16 C -0.172 4.172 17 C -0.155 4.155 18 H 0.099 0.901 19 C -0.073 4.073 20 H 0.263 0.737 21 H 0.342 0.658 22 H 0.031 0.969 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 -2.691 2.876 4.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.080 3.920 10 C 0.338 3.662 11 O -0.482 6.482 12 O -0.237 6.237 13 C -0.106 4.106 14 C -0.163 4.163 15 H 0.117 0.883 16 C -0.209 4.209 17 C -0.173 4.173 18 H 0.117 0.883 19 C -0.111 4.111 20 H 0.074 0.926 21 H 0.195 0.805 22 H 0.049 0.951 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.867 -2.719 3.029 4.162 hybrid contribution 0.174 0.899 -0.585 1.087 sum 1.042 -1.820 2.444 3.220 Atomic orbital electron populations 1.69814 1.05253 1.26390 1.44482 1.25056 0.95004 0.99220 0.95109 0.86616 0.79662 0.82835 0.78707 1.20344 1.21176 1.20098 1.20745 0.92932 0.88268 1.52977 0.91632 1.18988 0.89878 0.95344 0.87797 1.25045 0.77943 0.76469 0.86747 1.90496 1.72383 1.36896 1.48401 1.85809 1.43363 1.48239 1.46251 1.21773 0.94507 1.00315 0.93983 1.23106 0.99880 0.92821 1.00446 0.88264 1.23050 1.03112 0.94028 1.00747 1.23005 0.95872 1.04975 0.93496 0.88269 1.21849 0.98708 0.97585 0.92916 0.92602 0.80493 0.95066 0.88996 0.89546 0.89848 0.91981 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.52 8.51 55.43 0.47 -21.04 15 2 C 0.06 1.62 5.00 -17.82 -0.09 1.53 15 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 15 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.51 -13.40 7.68 -34.44 -0.26 -13.66 15 8 H 0.07 1.71 7.77 -52.49 -0.41 1.30 15 9 C 0.08 2.01 0.54 -155.12 -0.08 1.92 15 10 C 0.49 12.63 6.98 36.00 0.25 12.88 15 11 O -0.59 -15.66 16.49 -18.75 -0.31 -15.97 15 12 O -0.44 -10.59 9.57 -39.27 -0.38 -10.97 15 13 C -0.07 -1.55 5.33 -25.37 -0.14 -1.69 15 14 C -0.14 -2.87 6.76 -89.50 -0.60 -3.47 15 15 H 0.10 1.88 8.14 -51.93 -0.42 1.46 15 16 C -0.17 -2.95 10.09 -26.73 -0.27 -3.22 15 17 C -0.16 -3.01 6.76 -89.50 -0.61 -3.62 15 18 H 0.10 1.78 8.14 -51.93 -0.42 1.36 15 19 C -0.07 -1.62 5.16 -25.07 -0.13 -1.75 15 20 H 0.26 6.63 8.31 -40.82 -0.34 6.29 15 21 H 0.34 6.79 9.10 45.56 0.41 7.21 15 22 H 0.03 0.69 8.02 -51.93 -0.42 0.28 15 23 H 0.09 2.28 6.72 -51.93 -0.35 1.93 15 24 H 0.09 1.25 8.14 -51.92 -0.42 0.83 15 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 26 H 0.06 1.37 8.05 -51.93 -0.42 0.95 15 27 H 0.06 1.29 7.45 -51.93 -0.39 0.91 15 LS Contribution 227.72 15.07 3.43 3.43 Total: -1.00 -28.53 227.72 -6.12 -34.65 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.39 Total: 5.71 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.93 Total: -11.08 kcal Atomic # 7 Polarization: -21.52 SS G_CDS: 0.47 Total: -21.04 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.69 Total: -26.94 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.53 -6.12 -34.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575511085.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.022 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds