Wall clock time and date at job start Thu Apr 9 2020 14:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99991 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99898 * 3 2 1 7 7 C 1.38990 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.37395 * 120.00047 * 359.72348 * 7 2 1 10 10 C 1.36286 * 126.11973 * 180.28037 * 9 7 2 11 11 C 1.35236 * 107.58401 * 179.97438 * 10 9 7 12 12 C 1.50700 * 126.00640 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47311 * 89.99754 * 12 11 10 14 14 C 1.52997 * 109.47193 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47228 * 180.02562 * 14 13 12 16 16 C 1.40132 * 107.98788 * 359.97438 * 11 10 9 17 17 N 1.30939 * 108.40012 * 359.74086 * 16 11 10 18 18 H 0.96995 * 119.99901 * 0.02562 * 1 2 3 19 19 H 1.07994 * 126.20520 * 359.95149 * 10 9 7 20 20 H 1.09001 * 109.47027 * 210.00007 * 12 11 10 21 21 H 1.09000 * 109.47269 * 329.99827 * 12 11 10 22 22 H 1.09001 * 109.47282 * 300.00097 * 13 12 11 23 23 H 1.09006 * 109.46955 * 60.00561 * 13 12 11 24 24 H 1.09005 * 109.47805 * 300.00346 * 14 13 12 25 25 H 1.09008 * 109.46978 * 60.00531 * 14 13 12 26 26 H 0.96703 * 114.00370 * 180.02562 * 15 14 13 27 27 H 1.08003 * 125.80055 * 180.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0463 -1.4001 5 1 1.4444 2.6526 0.7000 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0001 9 7 1.3209 -2.3936 0.0047 10 6 1.8726 -3.6397 0.0102 11 6 0.8592 -4.5352 0.0147 12 6 1.0025 -6.0354 0.0210 13 6 1.0520 -6.5369 1.4655 14 6 1.1969 -8.0600 1.4719 15 8 1.2425 -8.5285 2.8211 16 6 -0.3476 -3.8230 0.0124 17 7 -0.0721 -2.5429 0.0124 18 1 -0.4850 0.8400 -0.0004 19 1 2.9276 -3.8703 0.0105 20 1 0.1508 -6.4839 -0.4904 21 1 1.9227 -6.3146 -0.4923 22 1 1.9038 -6.0884 1.9769 23 1 0.1318 -6.2578 1.9788 24 1 0.3449 -8.5083 0.9606 25 1 2.1170 -8.3396 0.9585 26 1 1.3342 -9.4879 2.9015 27 1 -1.3369 -4.2562 0.0153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585142869.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:51 Heat of formation + Delta-G solvation = 12.135378 kcal Electronic energy + Delta-G solvation = -11827.703749 eV Core-core repulsion = 9586.933056 eV Total energy + Delta-G solvation = -2240.770693 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39852 -36.94743 -34.00548 -32.86350 -30.22308 -28.51089 -25.69766 -23.85266 -21.10136 -20.42908 -18.76756 -17.39491 -16.86824 -15.42118 -15.25372 -14.40845 -13.80284 -13.18244 -13.05629 -12.78565 -12.10551 -11.71765 -11.44303 -11.34131 -11.14777 -10.82925 -10.62778 -10.46577 -10.22328 -9.78136 -9.34652 -8.60843 -8.02517 -7.04439 -6.50057 -4.20615 2.99761 3.08361 3.12821 3.65854 3.88268 4.19742 4.55145 4.85545 5.08514 5.29193 5.41349 5.66194 5.87494 6.20452 6.22832 6.29353 6.45393 6.61037 6.82936 6.92614 7.06306 7.26013 7.66650 7.71788 7.94728 8.29066 8.75871 9.48541 9.73715 10.46815 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.079506 B = 0.007110 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.089633 B = 3936.944996 C = 4079.786296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.047 3.953 3 Si 0.932 3.068 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.330 4.330 8 H 0.114 0.886 9 N -0.154 5.154 10 C -0.052 4.052 11 C -0.276 4.276 12 C -0.016 4.016 13 C -0.113 4.113 14 C 0.074 3.926 15 O -0.577 6.577 16 C -0.045 4.045 17 N -0.264 5.264 18 H 0.273 0.727 19 H 0.140 0.860 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.372 0.628 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -9.030 0.619 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.169 4.169 3 Si 0.756 3.244 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.132 0.868 9 N 0.080 4.920 10 C -0.202 4.202 11 C -0.291 4.291 12 C -0.055 4.055 13 C -0.151 4.151 14 C -0.004 4.004 15 O -0.382 6.382 16 C -0.221 4.221 17 N -0.094 5.094 18 H 0.083 0.917 19 H 0.158 0.842 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.218 0.782 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.349 -6.983 0.739 7.405 hybrid contribution 0.797 -0.704 -0.145 1.074 sum 3.146 -7.687 0.594 8.328 Atomic orbital electron populations 1.70213 1.06098 1.27713 1.36366 1.25610 0.95671 1.00179 0.95469 0.85865 0.79436 0.80149 0.78903 1.19649 1.20147 1.18856 1.19872 0.91616 0.80889 1.53773 0.86817 1.44837 1.03806 1.03792 1.39613 1.21788 0.97681 0.85334 1.15388 1.19217 0.92717 0.93792 1.23333 1.19451 1.00178 0.92133 0.93728 1.21609 1.03079 0.91566 0.98823 1.22368 0.99077 0.96563 0.82381 1.86533 1.97092 1.26746 1.27830 1.23388 0.97299 0.92393 1.08972 1.78149 0.90623 1.15322 1.25285 0.91679 0.84205 0.92820 0.93045 0.91666 0.91585 0.94013 0.94050 0.78235 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.16 11.82 55.50 0.66 -21.50 15 2 C 0.05 1.25 5.50 -17.50 -0.10 1.15 15 3 Si 0.93 19.49 29.55 -169.99 -5.02 14.47 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.33 -9.06 10.26 -14.78 -0.15 -9.21 15 8 H 0.11 2.82 7.83 -52.49 -0.41 2.41 15 9 N -0.15 -4.35 3.74 -11.54 -0.04 -4.39 15 10 C -0.05 -1.29 11.37 -16.64 -0.19 -1.48 15 11 C -0.28 -6.32 5.36 -104.98 -0.56 -6.88 15 12 C -0.02 -0.28 5.70 -27.89 -0.16 -0.44 15 13 C -0.11 -1.87 5.57 -26.73 -0.15 -2.02 15 14 C 0.07 0.97 7.05 37.16 0.26 1.23 15 15 O -0.58 -7.73 13.66 -35.23 -0.48 -8.21 15 16 C -0.05 -1.13 11.96 -17.22 -0.21 -1.34 15 17 N -0.26 -7.70 10.42 30.70 0.32 -7.38 15 18 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.14 3.00 8.06 -52.49 -0.42 2.58 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.04 0.49 8.14 -51.93 -0.42 0.06 15 25 H 0.04 0.48 8.14 -51.92 -0.42 0.06 15 26 H 0.37 2.94 9.12 45.56 0.42 3.36 15 27 H 0.15 3.23 8.06 -52.48 -0.42 2.81 15 LS Contribution 243.48 15.07 3.67 3.67 Total: -1.00 -32.66 243.48 -4.67 -37.33 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -2.51 Total: 5.02 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.25 Total: -18.99 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.93 Total: -33.27 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.48 Total: -8.21 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.66 -4.67 -37.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585142869.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.464 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds