Wall clock time and date at job start Thu Apr 9 2020 14:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50704 * 110.91481 * 56.03245 * 10 9 7 12 12 O 1.20823 * 119.99845 * 120.70143 * 11 10 9 13 13 O 1.34223 * 119.99650 * 300.70511 * 11 10 9 14 14 C 1.54632 * 111.03460 * 292.02626 * 10 9 7 15 15 C 1.51106 * 104.72368 * 217.33342 * 14 10 9 16 16 C 1.30534 * 111.10462 * 16.43453 * 15 14 10 17 17 C 1.51104 * 111.09976 * 0.02562 * 16 15 14 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 20 20 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 21 21 H 0.96703 * 116.99491 * 179.97438 * 13 11 10 22 22 H 1.08999 * 110.38887 * 336.14218 * 14 10 9 23 23 H 1.08992 * 110.39122 * 98.52092 * 14 10 9 24 24 H 1.08003 * 124.44816 * 196.45777 * 15 14 10 25 25 H 1.08000 * 124.44573 * 180.02562 * 16 15 14 26 26 H 1.08997 * 110.38151 * 224.74523 * 17 16 15 27 27 H 1.09004 * 110.38374 * 102.37923 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1927 -3.5600 1.1670 12 8 3.2486 -4.4524 1.9795 13 8 3.9743 -2.4774 1.3042 14 6 3.0173 -3.7323 -1.3385 15 6 3.1705 -5.2096 -1.6165 16 6 2.3478 -5.9130 -0.8868 17 6 1.5085 -5.0218 -0.0009 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 0.8897 20 1 0.6240 -2.5568 -0.8903 21 1 4.5655 -2.4570 2.0692 22 1 2.4446 -3.2538 -2.1329 23 1 3.9952 -3.2615 -1.2378 24 1 3.8691 -5.6286 -2.3256 25 1 2.2765 -6.9903 -0.9128 26 1 1.4607 -5.4276 1.0095 27 1 0.5060 -4.9112 -0.4144 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857856.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:05 Heat of formation + Delta-G solvation = -83.506862 kcal Electronic energy + Delta-G solvation = -12646.505703 eV Core-core repulsion = 10369.294900 eV Total energy + Delta-G solvation = -2277.210803 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.07908 -37.47377 -35.29899 -33.13382 -30.65710 -27.70617 -26.20794 -23.11436 -22.52857 -18.99338 -18.39694 -17.08647 -16.52562 -15.65317 -15.07141 -14.47728 -14.13460 -13.34229 -12.31549 -12.14155 -12.02976 -11.70592 -11.54451 -11.44335 -10.86079 -10.74610 -10.67234 -10.52096 -10.11589 -9.60509 -9.34542 -9.02509 -8.47958 -8.35996 -5.99741 -4.00239 2.65797 3.04089 3.35340 3.39750 3.42662 3.89311 4.47422 5.09468 5.18313 5.36568 5.68165 5.82402 5.91842 6.22771 6.30165 6.37816 6.45113 6.56669 6.82640 6.91264 7.24174 7.30738 7.54589 7.57176 8.02210 8.34429 8.74563 9.10373 9.63824 11.11935 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.044627 B = 0.012405 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.269178 B = 2256.630293 C = 2436.292829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.290 1.290 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.038 3.962 10 C -0.051 4.051 11 C 0.512 3.488 12 O -0.546 6.546 13 O -0.484 6.484 14 C -0.075 4.075 15 C -0.179 4.179 16 C -0.164 4.164 17 C -0.092 4.092 18 H 0.260 0.740 19 H 0.022 0.978 20 H 0.035 0.965 21 H 0.386 0.614 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -6.584 -1.606 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.001 3.999 10 C -0.052 4.052 11 C 0.357 3.643 12 O -0.437 6.437 13 O -0.292 6.292 14 C -0.112 4.112 15 C -0.197 4.197 16 C -0.182 4.182 17 C -0.128 4.128 18 H 0.070 0.930 19 H 0.040 0.960 20 H 0.054 0.946 21 H 0.242 0.758 22 H 0.111 0.889 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.099 0.901 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.993 -6.691 -1.739 8.528 hybrid contribution 0.793 0.912 0.546 1.326 sum 5.786 -5.778 -1.192 8.264 Atomic orbital electron populations 1.69961 1.06097 1.26740 1.51129 1.25012 0.94749 0.99274 0.95466 0.86618 0.79462 0.83020 0.78614 1.21610 1.20303 1.20277 1.21457 0.94058 0.89941 1.49916 0.90228 1.19193 0.92412 0.89848 0.98429 1.21537 0.94751 0.98452 0.90487 1.23243 0.77824 0.77405 0.85836 1.90579 1.67582 1.40737 1.44821 1.84922 1.51228 1.43309 1.49765 1.21312 1.00682 0.93060 0.96183 1.23421 0.99643 0.96447 1.00202 1.23258 0.97929 0.98726 0.98269 1.21476 0.98611 0.92436 1.00313 0.93007 0.96013 0.94637 0.75796 0.88890 0.90965 0.86322 0.86365 0.90138 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 15 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 15 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.52 -13.77 7.76 -34.44 -0.27 -14.04 15 8 H 0.08 2.07 5.59 -52.49 -0.29 1.77 15 9 C 0.04 0.94 3.95 -27.89 -0.11 0.83 15 10 C -0.05 -1.06 0.64 -153.94 -0.10 -1.16 15 11 C 0.51 10.82 6.89 36.01 0.25 11.07 15 12 O -0.55 -12.13 16.27 -18.75 -0.31 -12.44 15 13 O -0.48 -9.40 10.38 -39.24 -0.41 -9.80 15 14 C -0.08 -1.39 5.53 -26.83 -0.15 -1.54 15 15 C -0.18 -2.84 10.78 -35.70 -0.38 -3.22 15 16 C -0.16 -2.62 10.78 -35.70 -0.38 -3.00 15 17 C -0.09 -1.68 5.75 -26.82 -0.15 -1.83 15 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 19 H 0.02 0.58 8.14 -51.92 -0.42 0.16 15 20 H 0.04 0.91 8.05 -51.93 -0.42 0.49 15 21 H 0.39 5.47 9.10 45.56 0.41 5.89 15 22 H 0.09 1.75 7.83 -51.93 -0.41 1.34 15 23 H 0.07 1.31 7.82 -51.93 -0.41 0.91 15 24 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 25 H 0.12 1.59 8.06 -52.49 -0.42 1.16 15 26 H 0.08 1.52 6.97 -51.93 -0.36 1.16 15 27 H 0.09 1.51 7.89 -51.93 -0.41 1.10 15 LS Contribution 234.14 15.07 3.53 3.53 Total: -1.00 -30.95 234.14 -5.15 -36.10 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.28 Total: 3.32 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.40 Total: -11.44 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.71 Total: -22.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.95 -5.15 -36.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857856.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.404 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds