Wall clock time and date at job start Thu Apr 9 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48499 * 109.47138 * 270.00385 * 3 2 1 5 5 H 1.48502 * 109.46886 * 30.00249 * 3 2 1 6 6 H 1.48505 * 109.47112 * 150.00238 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 C 1.41384 * 128.00430 * 90.00022 * 13 12 11 15 15 N 1.30179 * 106.39362 * 179.97438 * 14 13 12 16 16 O 1.20921 * 111.60475 * 359.97438 * 15 14 13 17 17 C 1.34043 * 111.56808 * 359.76982 * 16 15 14 18 18 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 20 20 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 21 21 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 22 22 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 23 23 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 24 24 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 25 25 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 26 26 H 1.07995 * 126.80497 * 359.97438 * 14 13 12 27 27 H 1.08006 * 126.77891 * 180.27806 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 1.8118 -7.3677 -0.0018 14 6 1.3964 -8.1328 -1.1158 15 7 0.8202 -9.1971 -0.6364 16 8 0.8214 -9.1976 0.5728 17 6 1.4204 -8.1043 1.0654 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 2.8404 -3.5486 -0.7820 22 1 0.8801 -4.9817 0.8886 23 1 0.8807 -4.9812 -0.8913 24 1 3.1550 -5.9681 -0.8918 25 1 3.1552 -5.9691 0.8881 26 1 1.5306 -7.8836 -2.1580 27 1 1.5612 -7.8582 2.1076 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718864103.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:23 Heat of formation + Delta-G solvation = 51.092824 kcal Electronic energy + Delta-G solvation = -11562.343766 eV Core-core repulsion = 9323.262395 eV Total energy + Delta-G solvation = -2239.081372 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.91710 -36.31631 -34.25831 -32.62039 -31.85717 -29.24774 -26.14725 -23.21746 -22.63029 -21.34724 -20.77837 -17.86343 -17.49627 -16.40725 -15.18400 -14.96778 -14.58913 -13.73858 -13.56420 -13.11703 -12.44302 -12.12870 -11.99758 -11.42875 -11.19421 -10.83844 -10.71040 -10.55282 -10.26440 -9.96264 -9.40066 -9.13100 -8.51005 -7.36692 -6.05652 -4.08063 1.50534 2.26532 3.26701 3.30249 3.36378 3.40831 4.30353 4.41428 4.72937 4.92670 5.11637 5.30291 5.51792 5.55358 5.65205 5.74021 5.87393 6.12530 6.36669 6.40982 7.20715 7.37937 7.74772 8.09031 8.22502 8.33598 8.56302 9.01114 9.57031 11.05489 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.105863 B = 0.005464 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.428899 B = 5123.377252 C = 5198.509170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.064 3.936 12 C -0.043 4.043 13 C -0.188 4.188 14 C -0.008 4.008 15 N -0.372 5.372 16 O 0.092 5.908 17 C -0.063 4.063 18 H 0.262 0.738 19 H -0.013 1.013 20 H 0.028 0.972 21 H 0.329 0.671 22 H 0.065 0.935 23 H 0.019 0.981 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.188 0.812 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -13.185 0.524 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.321 5.321 11 C -0.066 4.066 12 C -0.081 4.081 13 C -0.193 4.193 14 C -0.187 4.187 15 N -0.075 5.075 16 O 0.027 5.973 17 C -0.144 4.144 18 H 0.071 0.929 19 H 0.004 0.996 20 H 0.046 0.954 21 H 0.145 0.855 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.205 0.795 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.007 -14.125 0.668 14.457 hybrid contribution 0.383 1.738 -0.824 1.961 sum 3.390 -12.387 -0.156 12.843 Atomic orbital electron populations 1.69963 1.06114 1.26853 1.50800 1.25006 0.94891 0.99436 0.95302 0.86468 0.79787 0.82933 0.78044 1.20708 1.21219 1.19731 1.21186 0.93537 0.90212 1.50483 0.91894 1.19562 0.90598 0.87332 0.95848 1.60696 1.21312 1.01220 1.48879 1.21852 0.94939 0.89734 1.00102 1.19963 0.97091 0.87433 1.03659 1.21580 1.05561 1.00306 0.91829 1.25037 0.99950 0.91538 1.02188 1.73846 1.19791 1.22325 0.91587 1.84781 1.58542 1.38266 1.15709 1.25872 0.99271 0.87811 1.01465 0.92867 0.99563 0.95390 0.85519 0.91682 0.96289 0.90764 0.89716 0.79491 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 15 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 15 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.52 -14.56 9.32 -34.44 -0.32 -14.88 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.19 5.05 5.44 -4.98 -0.03 5.03 15 10 N -0.69 -14.40 6.49 -115.06 -0.75 -15.14 15 11 C 0.06 1.08 5.67 -3.83 -0.02 1.06 15 12 C -0.04 -0.56 6.06 -27.89 -0.17 -0.73 15 13 C -0.19 -2.31 5.58 -104.42 -0.58 -2.89 15 14 C -0.01 -0.11 12.16 -17.06 -0.21 -0.31 15 15 N -0.37 -5.14 12.07 30.36 0.37 -4.77 15 16 O 0.09 1.16 11.20 17.17 0.19 1.35 15 17 C -0.06 -0.68 12.26 29.74 0.36 -0.31 15 18 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 19 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 15 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.33 6.44 8.72 -39.29 -0.34 6.10 15 22 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.19 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.22 1.52 8.06 -52.48 -0.42 1.10 15 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -31.17 245.66 -5.10 -36.27 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.27 Total: -0.27 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.06 Total: -11.56 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.36 Total: -46.03 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.19 Total: 1.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.17 -5.10 -36.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718864103.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.367 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds