Wall clock time and date at job start Thu Apr 9 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48499 * 109.47138 * 270.00385 * 3 2 1 5 5 H 1.48502 * 109.46886 * 30.00249 * 3 2 1 6 6 H 1.48505 * 109.47112 * 150.00238 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 C 1.41384 * 128.00430 * 90.00022 * 13 12 11 15 15 N 1.30179 * 106.39362 * 179.97438 * 14 13 12 16 16 O 1.20921 * 111.60475 * 359.97438 * 15 14 13 17 17 C 1.34043 * 111.56808 * 359.76982 * 16 15 14 18 18 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 20 20 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 21 21 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 22 22 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 23 23 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 24 24 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 25 25 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 26 26 H 1.07995 * 126.80497 * 359.97438 * 14 13 12 27 27 H 1.08006 * 126.77891 * 180.27806 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 1.8118 -7.3677 -0.0018 14 6 1.3964 -8.1328 -1.1158 15 7 0.8202 -9.1971 -0.6364 16 8 0.8214 -9.1976 0.5728 17 6 1.4204 -8.1043 1.0654 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 2.8404 -3.5486 -0.7820 22 1 0.8801 -4.9817 0.8886 23 1 0.8807 -4.9812 -0.8913 24 1 3.1550 -5.9681 -0.8918 25 1 3.1552 -5.9691 0.8881 26 1 1.5306 -7.8836 -2.1580 27 1 1.5612 -7.8582 2.1076 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718864103.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:23 Heat of formation + Delta-G solvation = 29.094858 kcal Electronic energy + Delta-G solvation = -11563.297670 eV Core-core repulsion = 9323.262395 eV Total energy + Delta-G solvation = -2240.035275 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.87555 -37.77123 -35.67941 -34.39943 -33.03496 -30.68059 -27.96707 -24.64144 -23.73451 -23.15872 -21.85505 -18.80858 -18.58101 -18.39532 -16.82788 -16.45043 -16.01949 -15.12656 -15.05210 -14.43267 -13.86936 -13.75255 -13.53556 -12.97414 -12.64253 -12.57842 -12.43354 -12.02990 -11.78131 -11.36610 -11.18674 -10.66348 -10.28664 -9.14990 -8.22616 -6.34167 0.60653 1.30329 1.42734 1.44340 1.56267 2.39869 2.42718 3.10989 3.34745 3.67784 3.81615 4.05727 4.30932 4.44011 4.50192 4.67454 4.82179 5.02727 5.09134 5.18162 5.22704 5.31500 5.61755 6.01323 6.42362 6.72306 6.89702 7.30741 7.37187 8.89128 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.105863 B = 0.005464 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.428899 B = 5123.377252 C = 5198.509170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.206 3.794 10 N -0.686 5.686 11 C 0.065 3.935 12 C -0.025 4.025 13 C -0.209 4.209 14 C -0.013 4.013 15 N -0.399 5.399 16 O 0.085 5.915 17 C -0.043 4.043 18 H 0.265 0.735 19 H -0.041 1.041 20 H 0.000 1.000 21 H 0.338 0.662 22 H 0.057 0.943 23 H 0.010 0.990 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.204 0.796 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -13.102 0.864 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.078 3.922 10 N -0.317 5.317 11 C -0.065 4.065 12 C -0.063 4.063 13 C -0.214 4.214 14 C -0.191 4.191 15 N -0.105 5.105 16 O 0.022 5.978 17 C -0.124 4.124 18 H 0.074 0.926 19 H -0.023 1.023 20 H 0.018 0.982 21 H 0.155 0.845 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.221 0.779 27 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.416 -14.075 1.012 14.787 hybrid contribution -0.081 1.649 -0.909 1.885 sum 4.335 -12.426 0.103 13.161 Atomic orbital electron populations 1.70096 1.07912 1.28047 1.51561 1.25998 0.95791 1.03557 0.94574 0.85298 0.78532 0.77784 0.78480 1.19701 1.20853 1.18627 1.21573 0.93971 0.91316 1.50558 0.91372 1.19222 0.90733 0.89094 0.93179 1.60552 1.20415 1.01395 1.49341 1.21912 0.95910 0.89296 0.99336 1.19728 0.95876 0.85908 1.04814 1.21541 1.07046 1.00439 0.92379 1.25409 0.99206 0.91200 1.03265 1.73851 1.21135 1.23289 0.92221 1.84761 1.58697 1.38907 1.15402 1.26561 0.96739 0.86389 1.02739 0.92621 1.02333 0.98208 0.84498 0.92410 0.97130 0.89636 0.88606 0.77946 0.73121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 13.29 21.45 0.28 -56.30 15 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 15 3 Si 0.97 43.78 29.54 68.60 2.03 45.80 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.54 -30.29 9.32 25.60 0.24 -30.05 15 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 15 9 C 0.21 10.97 5.44 85.55 0.47 11.43 15 10 N -0.69 -28.30 6.49 -517.93 -3.36 -31.66 15 11 C 0.07 2.16 5.67 86.30 0.49 2.65 15 12 C -0.03 -0.60 6.06 29.85 0.18 -0.42 15 13 C -0.21 -4.72 5.58 -19.74 -0.11 -4.83 15 14 C -0.01 -0.30 12.16 85.71 1.04 0.74 15 15 N -0.40 -10.63 12.07 -59.25 -0.72 -11.34 15 16 O 0.09 2.01 11.20 71.61 0.80 2.81 15 17 C -0.04 -0.82 12.26 67.18 0.82 0.00 15 18 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 19 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 15 20 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 21 H 0.34 12.91 8.72 -89.69 -0.78 12.13 15 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.20 3.90 8.06 -2.91 -0.02 3.88 15 27 H 0.25 2.65 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -66.74 245.66 3.01 -63.73 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.38 Total: 7.04 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.59 Total: -20.08 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -3.79 Total: -99.31 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.80 Total: 2.81 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -66.74 3.01 -63.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718864103.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.824 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds