Wall clock time and date at job start Thu Apr 9 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00620 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 C 1.41380 * 128.00419 * 90.00281 * 14 13 12 16 16 N 1.30181 * 106.39092 * 179.97438 * 15 14 13 17 17 O 1.20917 * 111.60549 * 359.97438 * 16 15 14 18 18 C 1.34041 * 111.56980 * 359.76630 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 23 23 H 1.00903 * 111.00093 * 321.05235 * 12 2 1 24 24 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 25 25 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 26 26 H 1.07997 * 126.80641 * 359.93811 * 15 14 13 27 27 H 1.08000 * 126.78319 * 180.28755 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 6 1.8327 -1.2206 -4.5260 16 7 2.6886 -1.7023 -5.3804 17 8 3.8244 -1.4099 -5.0859 18 6 3.8690 -0.6709 -3.9685 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7082 1.1610 3.4844 23 1 1.4496 -1.4979 -1.4100 24 1 1.0872 0.6163 -2.5525 25 1 2.7589 1.0462 -2.1181 26 1 0.7589 -1.3329 -4.5526 27 1 4.7525 -0.2744 -3.4903 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718912579.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:26 Heat of formation + Delta-G solvation = 59.562526 kcal Electronic energy + Delta-G solvation = -11978.612482 eV Core-core repulsion = 9739.898384 eV Total energy + Delta-G solvation = -2238.714098 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.71234 -36.44496 -34.00227 -32.37742 -31.38032 -28.56497 -25.30797 -24.77102 -22.61529 -20.98232 -20.23999 -17.71468 -17.30238 -16.34850 -14.92703 -14.61574 -14.49246 -13.56756 -13.38202 -12.67212 -12.18106 -11.85826 -11.73517 -11.12953 -10.92302 -10.78981 -10.54018 -10.18899 -10.16302 -9.92685 -9.21670 -9.03740 -8.39273 -7.32665 -6.01691 -4.05198 1.71621 2.46399 3.31417 3.37721 3.42048 3.46636 4.42063 4.50780 4.93747 5.19155 5.30129 5.44053 5.59404 5.83658 6.01647 6.20360 6.30126 6.63741 6.79020 7.03267 7.28368 7.69481 7.84006 8.21354 8.40900 8.45446 8.54904 9.01937 9.60414 11.05321 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066408 B = 0.007478 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.533951 B = 3743.284031 C = 3969.502424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.130 3.870 14 C -0.185 4.185 15 C -0.009 4.009 16 N -0.375 5.375 17 O 0.088 5.912 18 C -0.050 4.050 19 H 0.028 0.972 20 H 0.005 0.995 21 H 0.090 0.910 22 H 0.260 0.740 23 H 0.327 0.673 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.185 0.815 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 -0.796 -9.570 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.309 5.309 13 C 0.000 4.000 14 C -0.189 4.189 15 C -0.188 4.188 16 N -0.080 5.080 17 O 0.024 5.976 18 C -0.132 4.132 19 H 0.047 0.953 20 H 0.024 0.976 21 H 0.108 0.892 22 H 0.070 0.930 23 H 0.144 0.856 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.202 0.798 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.827 -1.331 -10.370 10.830 hybrid contribution -0.956 0.175 1.478 1.769 sum 1.871 -1.157 -8.891 9.160 Atomic orbital electron populations 1.22444 1.00618 0.99298 1.00585 1.19211 0.89701 0.94489 0.86304 0.94700 1.21141 1.30298 1.12505 0.89521 0.91922 1.24948 0.95284 0.95209 0.99063 1.69877 1.37208 1.23244 1.23414 0.86492 0.78449 0.80041 0.82376 1.20732 1.21410 1.19924 1.60901 1.58333 1.08896 1.02818 1.20175 0.98735 0.94441 0.86607 1.21627 0.92825 1.04464 0.99997 1.25000 1.01847 0.99168 0.92766 1.73820 0.90296 1.20416 1.23447 1.84759 1.23857 1.52585 1.36404 1.25839 1.00587 0.97673 0.89078 0.95278 0.97570 0.89150 0.93025 0.85649 0.94803 0.90306 0.79755 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.94 37.16 0.33 -3.64 15 2 C 0.21 5.12 2.57 -68.87 -0.18 4.94 15 3 H 0.04 0.92 7.80 -51.93 -0.40 0.52 15 4 C -0.50 -13.48 8.84 -34.44 -0.30 -13.78 15 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 15 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 15 7 N -0.90 -25.26 11.32 55.43 0.63 -24.63 15 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 12 N -0.68 -13.89 6.22 -109.22 -0.68 -14.57 15 13 C 0.13 2.19 6.06 -4.97 -0.03 2.16 15 14 C -0.18 -2.74 5.84 -104.42 -0.61 -3.35 15 15 C -0.01 -0.13 12.16 -17.06 -0.21 -0.34 15 16 N -0.38 -5.75 12.07 30.36 0.37 -5.38 15 17 O 0.09 1.26 11.20 17.18 0.19 1.45 15 18 C -0.05 -0.65 12.26 29.74 0.36 -0.28 15 19 H 0.03 0.65 8.13 -51.93 -0.42 0.23 15 20 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 15 21 H 0.09 2.36 6.07 -51.93 -0.32 2.04 15 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 23 H 0.33 6.50 8.46 -39.29 -0.33 6.17 15 24 H 0.03 0.56 7.44 -51.93 -0.39 0.18 15 25 H 0.08 1.31 8.06 -51.93 -0.42 0.89 15 26 H 0.19 2.22 8.06 -52.49 -0.42 1.80 15 27 H 0.22 2.11 8.06 -52.49 -0.42 1.68 15 LS Contribution 239.29 15.07 3.61 3.61 Total: -1.00 -28.90 239.29 -4.69 -33.59 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.06 Total: 2.60 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.73 Total: -12.87 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.31 Total: -44.58 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.90 -4.69 -33.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718912579.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.150 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds