Wall clock time and date at job start Thu Apr 9 2020 14:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47276 * 2 1 4 4 N 1.40430 * 126.82240 * 270.28941 * 3 2 1 5 5 C 1.30606 * 106.94162 * 180.15497 * 4 3 2 6 6 C 1.50700 * 125.46244 * 179.86127 * 5 4 3 7 7 C 1.50702 * 109.46869 * 269.71615 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 N 1.33362 * 109.06708 * 359.59252 * 5 4 3 16 16 C 1.31386 * 109.72112 * 0.26525 * 15 5 4 17 17 O 1.35440 * 126.04309 * 179.97438 * 16 15 5 18 18 H 1.09000 * 109.46754 * 179.97438 * 1 2 3 19 19 H 1.08994 * 109.47232 * 300.00205 * 1 2 3 20 20 H 1.09003 * 109.46791 * 60.00273 * 1 2 3 21 21 H 1.08999 * 109.47611 * 240.00089 * 2 1 3 22 22 H 1.08996 * 109.47285 * 120.00158 * 2 1 3 23 23 H 1.09004 * 109.47210 * 149.71908 * 6 5 4 24 24 H 1.08994 * 109.47551 * 29.71561 * 6 5 4 25 25 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 26 26 H 0.96704 * 114.00172 * 90.02696 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2936 2.1766 -1.1241 5 6 2.7083 3.3327 -0.6800 6 6 3.1215 4.5014 -1.5370 7 6 4.5987 4.4171 -1.8231 8 1 5.1801 3.5988 -1.4246 9 6 5.2069 5.3813 -2.5988 10 7 4.4988 6.3775 -3.0844 11 14 7.0364 5.2725 -2.9597 12 1 7.5997 4.0659 -2.3026 13 1 7.2468 5.1804 -4.4269 14 1 7.7170 6.4845 -2.4372 15 7 2.7019 3.3149 0.6535 16 6 2.2876 2.1431 1.0792 17 8 2.1550 1.7667 2.3735 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 2.9058 5.4317 -1.0113 24 1 2.5678 4.4776 -2.4755 25 1 4.9267 7.0560 -3.6298 26 1 1.2834 1.9516 2.7496 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:05 Heat of formation + Delta-G solvation = 15.819877 kcal Electronic energy + Delta-G solvation = -12136.933789 eV Core-core repulsion = 9830.896956 eV Total energy + Delta-G solvation = -2306.036832 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.06987 -38.63079 -36.23579 -35.14421 -32.14409 -31.72011 -29.43507 -25.84370 -24.50129 -22.65706 -21.63340 -19.41603 -18.66575 -17.88131 -16.84101 -16.59791 -15.53764 -15.37439 -14.60191 -14.38466 -14.05382 -13.73042 -13.56360 -13.07357 -12.73966 -12.67016 -12.42736 -12.11030 -11.84644 -11.61965 -11.00203 -10.76525 -10.60995 -10.20306 -8.23526 -6.34981 0.50158 1.14460 1.40992 1.42279 1.55466 1.86620 2.42293 2.61264 3.09271 3.55399 3.87117 4.06807 4.19886 4.34241 4.75897 4.80715 5.15456 5.17752 5.28068 5.32705 5.46382 5.64115 5.68064 6.07721 6.53773 6.70300 7.15374 7.31920 8.88288 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.057607 B = 0.008263 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.934224 B = 3387.978961 C = 3457.675309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.112 3.888 3 N -0.384 5.384 4 N -0.332 5.332 5 C 0.258 3.742 6 C 0.112 3.888 7 C -0.530 4.530 8 H 0.044 0.956 9 C 0.012 3.988 10 N -0.923 5.923 11 Si 0.972 3.028 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.271 1.271 15 N -0.574 5.574 16 C 0.440 3.560 17 O -0.434 6.434 18 H 0.111 0.889 19 H 0.065 0.935 20 H 0.044 0.956 21 H 0.098 0.902 22 H 0.124 0.876 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.270 0.730 26 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 -12.897 8.075 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.008 4.008 3 N -0.188 5.188 4 N -0.164 5.164 5 C -0.023 4.023 6 C 0.072 3.928 7 C -0.569 4.569 8 H 0.062 0.938 9 C -0.187 4.187 10 N -0.562 5.562 11 Si 0.796 3.204 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.196 1.196 15 N -0.313 5.313 16 C 0.127 3.873 17 O -0.238 6.238 18 H 0.130 0.870 19 H 0.084 0.916 20 H 0.063 0.937 21 H 0.117 0.883 22 H 0.142 0.858 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -7.216 -12.992 7.571 16.678 hybrid contribution 0.253 0.190 0.059 0.322 sum -6.963 -12.802 7.630 16.449 Atomic orbital electron populations 1.22123 0.92253 1.04900 1.02367 1.22204 0.96730 0.75652 1.06190 1.51150 1.50061 1.14445 1.03098 1.78069 1.26701 1.04502 1.07108 1.24559 0.93914 0.95058 0.88788 1.17464 0.96188 0.87431 0.91714 1.21092 0.93274 1.09985 1.32528 0.93792 1.25834 1.03555 0.94391 0.94900 1.70054 1.38003 1.13221 1.34965 0.85298 0.78598 0.78245 0.78245 1.19718 1.19555 1.19648 1.70538 1.27524 1.20720 1.12506 1.21229 0.96177 0.86037 0.83906 1.84789 1.41599 1.82146 1.15258 0.87048 0.91564 0.93702 0.88341 0.85811 0.95391 0.95412 0.92126 0.70605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 71.98 0.74 -1.76 15 2 C 0.11 2.37 7.18 86.38 0.62 2.99 15 3 N -0.38 -13.27 3.65 -464.30 -1.69 -14.97 15 4 N -0.33 -15.25 12.68 -51.32 -0.65 -15.90 15 5 C 0.26 13.21 7.32 138.63 1.02 14.22 15 6 C 0.11 6.44 5.60 29.10 0.16 6.60 15 7 C -0.53 -32.20 9.09 25.60 0.23 -31.97 15 8 H 0.04 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.01 0.72 5.46 84.66 0.46 1.19 15 10 N -0.92 -56.07 13.29 21.45 0.28 -55.79 15 11 Si 0.97 45.74 29.54 68.60 2.03 47.76 15 12 H -0.27 -12.69 7.11 99.48 0.71 -11.99 15 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 15 N -0.57 -26.96 11.22 -305.75 -3.43 -30.39 15 16 C 0.44 15.83 9.13 180.07 1.64 17.47 15 17 O -0.43 -10.64 13.58 -87.36 -1.19 -11.83 15 18 H 0.11 1.01 8.14 -2.39 -0.02 0.99 15 19 H 0.07 0.92 8.14 -2.39 -0.02 0.90 15 20 H 0.04 0.93 8.14 -2.39 -0.02 0.91 15 21 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.12 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.03 1.68 8.14 -2.38 -0.02 1.66 15 24 H 0.03 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.27 15.15 8.31 -92.70 -0.77 14.38 15 26 H 0.43 5.08 9.06 -74.05 -0.67 4.41 15 Total: -1.00 -76.53 241.40 0.74 -75.79 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: 0.52 Total: -3.42 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.87 Total: 8.74 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -5.49 Total: -117.04 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.19 Total: -11.83 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.53 0.74 -75.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.609 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds