Wall clock time and date at job start Thu Apr 9 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00058 * 2 1 4 4 C 1.50694 * 109.47276 * 270.00532 * 3 2 1 5 5 H 1.08007 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00220 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99860 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00289 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47069 * 89.99559 * 8 6 4 10 10 H 1.48496 * 109.46986 * 209.99740 * 8 6 4 11 11 H 1.48501 * 109.47139 * 329.99602 * 8 6 4 12 12 C 1.38892 * 120.00325 * 180.02562 * 2 1 3 13 13 N 1.31020 * 126.00006 * 180.02562 * 12 2 1 14 14 N 1.40109 * 107.99303 * 179.97438 * 13 12 2 15 15 C 1.31030 * 107.98291 * 359.72501 * 14 13 12 16 16 N 1.38899 * 125.99503 * 180.29134 * 15 14 13 17 17 N 1.36594 * 108.00858 * 0.43497 * 15 14 13 18 18 H 0.97001 * 125.99856 * 179.83057 * 17 15 14 19 19 H 1.09003 * 109.47045 * 269.99814 * 1 2 3 20 20 H 1.08999 * 109.47177 * 30.00132 * 1 2 3 21 21 H 1.08999 * 109.47070 * 149.99684 * 1 2 3 22 22 H 1.09000 * 109.46633 * 29.99860 * 3 2 1 23 23 H 1.08999 * 109.47076 * 149.99766 * 3 2 1 24 24 H 0.97001 * 120.00008 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00321 * 180.16693 * 16 15 14 26 26 H 0.97003 * 120.00097 * 0.16535 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0979 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4387 3.4166 -3.4339 9 1 2.3090 4.2598 -3.9008 10 1 4.6992 4.1990 -3.4961 11 1 3.5557 2.2193 -4.3046 12 6 2.1595 -1.2028 -0.0005 13 7 3.4625 -1.3397 -0.0001 14 7 3.7537 -2.7102 -0.0003 15 6 2.6188 -3.3649 0.0051 16 7 2.4732 -4.7462 0.0125 17 7 1.6039 -2.4507 -0.0010 18 1 0.6550 -2.6523 -0.0013 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8899 -0.5139 22 1 1.6084 2.0283 0.5138 23 1 3.1499 1.1384 0.5139 24 1 4.0311 4.4436 -0.8503 25 1 1.5870 -5.1406 0.0137 26 1 3.2578 -5.3166 0.0165 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306447945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:23 Heat of formation + Delta-G solvation = 96.698157 kcal Electronic energy + Delta-G solvation = -12263.822391 eV Core-core repulsion = 9993.585455 eV Total energy + Delta-G solvation = -2270.236936 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08013 -36.13817 -34.00162 -32.62777 -31.72471 -28.46315 -27.71559 -24.91963 -22.79878 -20.94997 -19.87888 -18.16851 -16.53268 -16.31097 -15.71196 -15.06429 -14.79417 -14.24621 -13.47781 -13.33286 -12.17047 -11.82039 -11.20456 -11.11170 -10.79969 -10.58446 -10.29477 -10.08160 -9.79796 -9.63515 -9.55260 -8.47564 -8.37473 -6.69717 -5.95692 -4.02634 2.67859 2.99734 3.34625 3.41967 3.46561 3.58506 3.69661 4.39084 4.51550 5.35778 5.42350 5.73839 5.83412 5.92405 6.09598 6.37762 6.82896 7.09258 7.45205 7.63781 7.78046 7.91254 8.07961 8.29354 8.41823 8.99488 9.25246 9.62048 11.09451 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.048676 B = 0.009449 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.093124 B = 2962.659684 C = 3178.353044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.590 5.590 3 C 0.268 3.732 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.496 3.504 13 N -0.349 5.349 14 N -0.366 5.366 15 C 0.451 3.549 16 N -0.841 5.841 17 N -0.657 5.657 18 H 0.405 0.595 19 H 0.040 0.960 20 H 0.080 0.920 21 H 0.042 0.958 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.401 0.599 26 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 -12.134 1.561 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.315 5.315 3 C 0.150 3.850 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.134 3.866 13 N -0.189 5.189 14 N -0.205 5.205 15 C 0.085 3.915 16 N -0.400 5.400 17 N -0.291 5.291 18 H 0.242 0.758 19 H 0.058 0.942 20 H 0.098 0.902 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.229 0.771 26 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.538 -11.296 1.603 13.150 hybrid contribution -1.932 -0.490 -1.063 2.258 sum -8.469 -11.786 0.541 14.523 Atomic orbital electron populations 1.21466 0.80527 1.02136 0.99944 1.46212 1.03890 1.01452 1.79956 1.19298 0.92221 0.76173 0.97326 1.21491 1.36410 1.06128 0.92492 0.92566 1.24905 0.95328 0.96406 0.97295 1.69929 1.38464 1.14355 1.30646 0.86511 0.77602 0.78519 0.84859 1.20817 1.21072 1.19962 1.20752 0.89242 0.79720 0.96936 1.78398 1.05913 1.03543 1.31057 1.78017 1.16604 0.97850 1.28002 1.20381 0.85822 0.84368 1.00971 1.40772 1.11206 0.99273 1.88744 1.43669 1.09600 1.05251 1.70537 0.75793 0.94206 0.90162 0.93969 0.94698 0.93492 0.92730 0.77088 0.74877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.53 59.85 0.63 2.27 15 2 N -0.59 -12.70 2.97 -184.34 -0.55 -13.25 15 3 C 0.27 7.02 5.31 -5.19 -0.03 6.99 15 4 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 15 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 15 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 7 N -0.89 -26.68 13.29 55.43 0.74 -25.95 15 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 15 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 15 12 C 0.50 10.75 8.41 -318.45 -2.68 8.07 15 13 N -0.35 -8.79 12.05 30.37 0.37 -8.42 15 14 N -0.37 -8.06 12.72 30.38 0.39 -7.68 15 15 C 0.45 7.58 9.55 -318.45 -3.04 4.54 15 16 N -0.84 -8.88 9.09 30.37 0.28 -8.60 15 17 N -0.66 -10.73 5.90 -13.49 -0.08 -10.81 15 18 H 0.41 4.84 7.94 -40.82 -0.32 4.52 15 19 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.08 1.29 8.07 -51.93 -0.42 0.87 15 21 H 0.04 0.54 7.06 -51.93 -0.37 0.17 15 22 H 0.04 0.92 8.07 -51.93 -0.42 0.50 15 23 H 0.05 1.38 7.67 -51.93 -0.40 0.98 15 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 25 H 0.40 2.79 8.95 -40.82 -0.37 2.42 15 26 H 0.42 3.84 8.95 -40.82 -0.37 3.48 15 LS Contribution 236.52 15.07 3.56 3.56 Total: -1.00 -35.26 236.52 -8.48 -43.74 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.63 Total: 1.98 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -5.54 Total: 8.28 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: 1.14 Total: -74.71 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -35.26 -8.48 -43.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306447945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.438 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds