Wall clock time and date at job start Thu Apr 9 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00058 * 2 1 4 4 C 1.50694 * 109.47276 * 270.00532 * 3 2 1 5 5 H 1.08007 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00220 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99860 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00289 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47069 * 89.99559 * 8 6 4 10 10 H 1.48496 * 109.46986 * 209.99740 * 8 6 4 11 11 H 1.48501 * 109.47139 * 329.99602 * 8 6 4 12 12 C 1.38892 * 120.00325 * 180.02562 * 2 1 3 13 13 N 1.31020 * 126.00006 * 180.02562 * 12 2 1 14 14 N 1.40109 * 107.99303 * 179.97438 * 13 12 2 15 15 C 1.31030 * 107.98291 * 359.72501 * 14 13 12 16 16 N 1.38899 * 125.99503 * 180.29134 * 15 14 13 17 17 N 1.36594 * 108.00858 * 0.43497 * 15 14 13 18 18 H 0.97001 * 125.99856 * 179.83057 * 17 15 14 19 19 H 1.09003 * 109.47045 * 269.99814 * 1 2 3 20 20 H 1.08999 * 109.47177 * 30.00132 * 1 2 3 21 21 H 1.08999 * 109.47070 * 149.99684 * 1 2 3 22 22 H 1.09000 * 109.46633 * 29.99860 * 3 2 1 23 23 H 1.08999 * 109.47076 * 149.99766 * 3 2 1 24 24 H 0.97001 * 120.00008 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00321 * 180.16693 * 16 15 14 26 26 H 0.97003 * 120.00097 * 0.16535 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0979 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4387 3.4166 -3.4339 9 1 2.3090 4.2598 -3.9008 10 1 4.6992 4.1990 -3.4961 11 1 3.5557 2.2193 -4.3046 12 6 2.1595 -1.2028 -0.0005 13 7 3.4625 -1.3397 -0.0001 14 7 3.7537 -2.7102 -0.0003 15 6 2.6188 -3.3649 0.0051 16 7 2.4732 -4.7462 0.0125 17 7 1.6039 -2.4507 -0.0010 18 1 0.6550 -2.6523 -0.0013 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8899 -0.5139 22 1 1.6084 2.0283 0.5138 23 1 3.1499 1.1384 0.5139 24 1 4.0311 4.4436 -0.8503 25 1 1.5870 -5.1406 0.0137 26 1 3.2578 -5.3166 0.0165 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306447945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:23 Heat of formation + Delta-G solvation = 73.270706 kcal Electronic energy + Delta-G solvation = -12264.838282 eV Core-core repulsion = 9993.585455 eV Total energy + Delta-G solvation = -2271.252826 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.56868 -37.77034 -35.29384 -34.64475 -33.28298 -29.90168 -29.66287 -26.56439 -24.73844 -22.35050 -21.46454 -19.55135 -18.60284 -17.63798 -17.09051 -16.61269 -16.55516 -15.87185 -15.06948 -14.92182 -14.01132 -13.40737 -13.14173 -12.78890 -12.52493 -12.38185 -12.14499 -11.80009 -11.61199 -11.38483 -11.09719 -10.57202 -9.92460 -8.41221 -8.02669 -6.29023 1.25781 1.39175 1.43046 1.52750 1.57562 1.99995 2.30272 2.45010 3.14044 3.22681 4.08954 4.36272 4.56842 4.66016 4.81108 4.98493 5.12392 5.32470 5.66194 5.80452 6.10346 6.25710 6.39517 6.75586 6.86893 6.96214 7.39738 7.76529 8.90896 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.048676 B = 0.009449 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.093124 B = 2962.659684 C = 3178.353044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.598 5.598 3 C 0.286 3.714 4 C -0.538 4.538 5 H 0.048 0.952 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.964 3.036 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.488 3.512 13 N -0.417 5.417 14 N -0.421 5.421 15 C 0.475 3.525 16 N -0.808 5.808 17 N -0.635 5.635 18 H 0.429 0.571 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.030 0.970 23 H 0.004 0.996 24 H 0.266 0.734 25 H 0.423 0.577 26 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -13.661 0.743 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.324 5.324 3 C 0.165 3.835 4 C -0.577 4.577 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.124 3.876 13 N -0.257 5.257 14 N -0.261 5.261 15 C 0.107 3.893 16 N -0.371 5.371 17 N -0.271 5.271 18 H 0.271 0.729 19 H 0.083 0.917 20 H 0.093 0.907 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.075 0.925 25 H 0.256 0.744 26 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -8.371 -12.905 0.790 15.403 hybrid contribution -1.443 -0.170 -0.758 1.639 sum -9.814 -13.075 0.033 16.349 Atomic orbital electron populations 1.21756 0.76971 1.03625 1.02044 1.46047 1.05802 1.00157 1.80369 1.18728 0.90888 0.78236 0.95687 1.21725 1.36494 1.06191 0.93253 0.93339 1.25758 0.95017 0.96524 1.01490 1.70040 1.39101 1.14818 1.32767 0.85479 0.78007 0.78001 0.79650 1.18873 1.20745 1.20286 1.20628 0.89013 0.81126 0.96798 1.78222 1.08482 1.06024 1.32989 1.77866 1.19093 0.96922 1.32197 1.20671 0.84807 0.86250 0.97579 1.40810 1.13240 0.96449 1.86589 1.43277 1.10764 1.03253 1.69824 0.72917 0.91670 0.90719 0.90463 0.95254 0.97738 0.92474 0.74393 0.73630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.88 10.53 127.77 1.35 4.23 15 2 N -0.60 -25.62 2.97 -737.13 -2.19 -27.81 15 3 C 0.29 15.37 5.31 85.63 0.45 15.83 15 4 C -0.54 -31.10 9.39 25.60 0.24 -30.86 15 5 H 0.05 2.82 7.81 -2.91 -0.02 2.79 15 6 C 0.01 0.64 5.46 84.65 0.46 1.10 15 7 N -0.93 -56.32 13.29 21.45 0.28 -56.04 15 8 Si 0.96 45.68 29.54 68.60 2.03 47.71 15 9 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 10 H -0.28 -13.13 7.11 99.48 0.71 -12.43 15 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 12 C 0.49 21.04 8.41 259.97 2.19 23.23 15 13 N -0.42 -21.52 12.05 -57.81 -0.70 -22.21 15 14 N -0.42 -18.55 12.72 -57.81 -0.74 -19.28 15 15 C 0.47 14.96 9.55 259.96 2.48 17.44 15 16 N -0.81 -14.19 9.09 -57.83 -0.53 -14.72 15 17 N -0.64 -19.26 5.90 -196.58 -1.16 -20.42 15 18 H 0.43 8.58 7.94 -92.71 -0.74 7.84 15 19 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.07 2.28 8.07 -2.39 -0.02 2.26 15 21 H 0.08 1.69 7.06 -2.39 -0.02 1.68 15 22 H 0.03 1.59 8.07 -2.39 -0.02 1.57 15 23 H 0.00 0.28 7.67 -2.39 -0.02 0.26 15 24 H 0.27 15.21 8.31 -92.71 -0.77 14.43 15 25 H 0.42 3.93 8.95 -92.71 -0.83 3.10 15 26 H 0.43 6.44 8.95 -92.71 -0.83 5.61 15 Total: -1.00 -79.58 236.52 3.02 -76.57 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -1.16 Total: 5.25 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 7.17 Total: 30.97 kcal Atomic # 7 Polarization: -155.46 SS G_CDS: -5.02 Total: -160.49 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -79.58 3.02 -76.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306447945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.836 kcal (2) G-P(sol) polarization free energy of solvation -79.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds