Wall clock time and date at job start Thu Apr 9 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48498 * 109.46929 * 269.99720 * 3 2 1 5 5 H 1.48497 * 109.47204 * 29.99747 * 3 2 1 6 6 H 1.48499 * 109.46802 * 149.99824 * 3 2 1 7 7 C 1.37878 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00852 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99528 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99908 * 66.04851 * 11 10 9 13 13 C 1.53302 * 108.63351 * 182.43554 * 12 11 10 14 14 O 1.42915 * 108.58774 * 71.36244 * 13 12 11 15 15 C 1.42315 * 114.59570 * 307.13805 * 14 13 12 16 16 H 1.09000 * 115.01913 * 166.15216 * 15 14 13 17 17 C 1.52469 * 119.34020 * 310.48262 * 15 14 13 18 18 C 1.46857 * 110.99948 * 301.73038 * 11 10 9 19 19 H 1.09006 * 115.50576 * 357.92596 * 18 11 10 20 20 H 0.97000 * 119.99303 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47205 * 59.99924 * 9 7 2 22 22 H 1.09002 * 109.47394 * 300.00300 * 9 7 2 23 23 H 1.09006 * 109.46827 * 60.00312 * 10 9 7 24 24 H 1.08992 * 109.47102 * 300.00331 * 10 9 7 25 25 H 1.08994 * 109.61070 * 62.68946 * 12 11 10 26 26 H 1.09004 * 109.60771 * 302.17822 * 12 11 10 27 27 H 1.08998 * 109.62212 * 311.63068 * 13 12 11 28 28 H 1.09000 * 109.76734 * 191.18110 * 13 12 11 29 29 H 1.09004 * 117.52242 * 1.18173 * 17 15 14 30 30 H 1.08997 * 117.56137 * 216.02165 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4905 -2.6368 0.0009 12 6 6.0170 -2.0801 1.2544 13 6 7.5475 -2.0493 1.1719 14 8 7.9334 -1.0303 0.2470 15 6 7.3138 -1.1246 -1.0307 16 1 7.4114 -0.2378 -1.6569 17 6 7.3197 -2.4596 -1.7672 18 6 6.0167 -1.9156 -1.1651 19 1 5.2671 -1.5301 -1.8562 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 3.6584 -3.1503 -0.8893 24 1 3.6577 -3.1507 0.8906 25 1 5.7083 -2.7067 2.0911 26 1 5.6376 -1.0676 1.3928 27 1 7.9149 -3.0154 0.8262 28 1 7.9652 -1.8291 2.1542 29 1 7.7891 -3.3077 -1.2688 30 1 7.4212 -2.4365 -2.8522 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306493110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:26 Heat of formation + Delta-G solvation = -8.995806 kcal Electronic energy + Delta-G solvation = -12888.686650 eV Core-core repulsion = 10685.114073 eV Total energy + Delta-G solvation = -2203.572578 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05247 -35.95307 -33.96164 -32.76699 -30.43772 -27.87329 -24.19433 -23.68194 -21.90916 -20.63876 -18.91737 -17.17537 -16.47744 -16.36803 -15.01109 -14.45801 -13.94281 -13.80738 -13.34188 -13.30536 -12.53375 -12.22211 -12.03040 -11.53752 -11.09017 -10.95899 -10.92171 -10.69152 -10.02583 -9.94580 -9.77875 -9.28765 -8.96200 -8.59149 -7.72543 -6.10380 -4.09110 3.25587 3.33842 3.37823 3.74911 3.91438 4.32292 4.39685 4.71274 5.03779 5.14168 5.21937 5.24221 5.45367 5.46739 5.81662 5.90019 5.98736 6.06863 6.14441 6.23212 6.35420 6.63730 7.04971 7.13049 7.24387 7.41210 7.51001 7.77176 8.46254 8.93907 9.51923 11.02794 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046837 B = 0.010395 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.668908 B = 2692.889366 C = 2845.319345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.043 4.043 10 C 0.066 3.934 11 N -0.510 5.510 12 C 0.011 3.989 13 C 0.057 3.943 14 O -0.352 6.352 15 C 0.021 3.979 16 H 0.139 0.861 17 C -0.207 4.207 18 C -0.005 4.005 19 H 0.119 0.881 20 H 0.264 0.736 21 H 0.017 0.983 22 H 0.013 0.987 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.127 -2.882 -0.351 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.082 4.082 10 C -0.060 4.060 11 N -0.232 5.232 12 C -0.117 4.117 13 C -0.020 4.020 14 O -0.269 6.269 15 C -0.039 4.039 16 H 0.157 0.843 17 C -0.246 4.246 18 C -0.115 4.115 19 H 0.137 0.863 20 H 0.073 0.927 21 H 0.035 0.965 22 H 0.031 0.969 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.246 -3.128 -0.305 14.589 hybrid contribution -0.214 1.486 -0.041 1.502 sum 14.032 -1.642 -0.346 14.132 Atomic orbital electron populations 1.69914 1.06267 1.26943 1.50843 1.25027 0.94721 0.99136 0.94449 0.86791 0.80337 0.83705 0.78547 1.20267 1.21266 1.19168 1.21024 0.89129 0.94573 1.51152 0.90855 1.20166 0.97961 0.93635 0.96391 1.22236 0.82810 0.98731 1.02255 1.62290 1.10356 1.50278 1.00286 1.22745 0.95134 1.00435 0.93361 1.22868 0.94323 0.91650 0.93119 1.87711 1.66653 1.51099 1.21474 1.23058 0.97875 0.96166 0.86762 0.84339 1.23794 1.02155 0.98581 1.00058 1.23228 0.91246 0.99905 0.97144 0.86299 0.92669 0.96508 0.96905 0.90946 0.90989 0.89547 0.92517 0.92242 0.88361 0.88466 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.04 -1.02 3.49 -27.88 -0.10 -1.12 16 10 C 0.07 1.33 5.22 -3.82 -0.02 1.31 16 11 N -0.51 -8.94 4.92 -226.47 -1.11 -10.06 16 12 C 0.01 0.18 5.40 -3.66 -0.02 0.16 16 13 C 0.06 0.79 6.73 37.31 0.25 1.04 16 14 O -0.35 -5.60 10.85 -35.23 -0.38 -5.98 16 15 C 0.02 0.32 7.10 -27.25 -0.19 0.12 16 16 H 0.14 1.82 8.14 -51.93 -0.42 1.40 16 17 C -0.21 -2.82 9.96 -26.75 -0.27 -3.09 16 18 C -0.01 -0.08 5.14 -67.73 -0.35 -0.43 16 19 H 0.12 2.06 6.60 -51.93 -0.34 1.72 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H 0.02 0.41 5.57 -51.93 -0.29 0.12 16 22 H 0.01 0.30 5.86 -51.93 -0.30 0.00 16 23 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 24 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 25 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.05 6.38 -51.93 -0.33 0.72 16 27 H 0.06 0.79 7.20 -51.93 -0.37 0.41 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.33 7.26 -51.93 -0.38 0.95 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 240.12 15.07 3.62 3.62 Total: -1.00 -30.78 240.12 -7.04 -37.82 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.14 Total: -0.48 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.12 Total: -15.19 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.34 Total: -37.04 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.38 Total: -5.98 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.78 -7.04 -37.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306493110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.822 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds