Wall clock time and date at job start Thu Apr 9 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48498 * 109.46929 * 269.99720 * 3 2 1 5 5 H 1.48497 * 109.47204 * 29.99747 * 3 2 1 6 6 H 1.48499 * 109.46802 * 149.99824 * 3 2 1 7 7 C 1.37878 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00852 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99528 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99908 * 66.04851 * 11 10 9 13 13 C 1.53302 * 108.63351 * 182.43554 * 12 11 10 14 14 O 1.42915 * 108.58774 * 71.36244 * 13 12 11 15 15 C 1.42315 * 114.59570 * 307.13805 * 14 13 12 16 16 H 1.09000 * 115.01913 * 166.15216 * 15 14 13 17 17 C 1.52469 * 119.34020 * 310.48262 * 15 14 13 18 18 C 1.46857 * 110.99948 * 301.73038 * 11 10 9 19 19 H 1.09006 * 115.50576 * 357.92596 * 18 11 10 20 20 H 0.97000 * 119.99303 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47205 * 59.99924 * 9 7 2 22 22 H 1.09002 * 109.47394 * 300.00300 * 9 7 2 23 23 H 1.09006 * 109.46827 * 60.00312 * 10 9 7 24 24 H 1.08992 * 109.47102 * 300.00331 * 10 9 7 25 25 H 1.08994 * 109.61070 * 62.68946 * 12 11 10 26 26 H 1.09004 * 109.60771 * 302.17822 * 12 11 10 27 27 H 1.08998 * 109.62212 * 311.63068 * 13 12 11 28 28 H 1.09000 * 109.76734 * 191.18110 * 13 12 11 29 29 H 1.09004 * 117.52242 * 1.18173 * 17 15 14 30 30 H 1.08997 * 117.56137 * 216.02165 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4905 -2.6368 0.0009 12 6 6.0170 -2.0801 1.2544 13 6 7.5475 -2.0493 1.1719 14 8 7.9334 -1.0303 0.2470 15 6 7.3138 -1.1246 -1.0307 16 1 7.4114 -0.2378 -1.6569 17 6 7.3197 -2.4596 -1.7672 18 6 6.0167 -1.9156 -1.1651 19 1 5.2671 -1.5301 -1.8562 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 3.6584 -3.1503 -0.8893 24 1 3.6577 -3.1507 0.8906 25 1 5.7083 -2.7067 2.0911 26 1 5.6376 -1.0676 1.3928 27 1 7.9149 -3.0154 0.8262 28 1 7.9652 -1.8291 2.1542 29 1 7.7891 -3.3077 -1.2688 30 1 7.4212 -2.4365 -2.8522 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306493110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:26 Heat of formation + Delta-G solvation = -31.393744 kcal Electronic energy + Delta-G solvation = -12889.657898 eV Core-core repulsion = 10685.114073 eV Total energy + Delta-G solvation = -2204.543825 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27431 -37.39878 -35.29297 -34.71570 -32.16803 -29.41381 -25.87537 -24.98541 -23.38896 -22.09668 -20.23282 -19.15310 -17.84339 -17.65843 -16.52278 -16.14635 -15.35898 -15.19071 -15.02415 -14.81633 -14.34577 -13.70537 -13.35899 -13.08359 -12.85836 -12.47352 -12.21692 -12.12523 -11.92771 -11.59656 -11.45299 -11.28143 -10.81325 -10.13459 -9.13659 -8.35499 -6.39753 1.28429 1.30793 1.42039 2.28975 2.60039 2.71854 2.99070 3.09477 3.54610 3.88059 3.99262 4.05398 4.27607 4.30805 4.43841 4.53704 4.68935 4.78162 4.82508 4.89385 4.96424 5.16996 5.26815 5.34239 5.52771 5.96561 6.03744 6.17122 6.25371 6.68348 7.24957 8.80931 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046837 B = 0.010395 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.668908 B = 2692.889366 C = 2845.319345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.032 4.032 10 C 0.078 3.922 11 N -0.505 5.505 12 C 0.007 3.993 13 C 0.061 3.939 14 O -0.366 6.366 15 C 0.019 3.981 16 H 0.156 0.844 17 C -0.180 4.180 18 C -0.040 4.040 19 H 0.106 0.894 20 H 0.267 0.733 21 H 0.013 0.987 22 H 0.016 0.984 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.590 -2.379 -0.536 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.071 4.071 10 C -0.050 4.050 11 N -0.227 5.227 12 C -0.121 4.121 13 C -0.015 4.015 14 O -0.284 6.284 15 C -0.041 4.041 16 H 0.173 0.827 17 C -0.218 4.218 18 C -0.150 4.150 19 H 0.124 0.876 20 H 0.076 0.924 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.731 -2.641 -0.494 16.946 hybrid contribution -1.012 1.248 0.017 1.607 sum 15.719 -1.393 -0.477 15.788 Atomic orbital electron populations 1.70056 1.08118 1.28189 1.52335 1.25955 0.95567 1.03243 0.94097 0.85690 0.79147 0.78750 0.79240 1.18967 1.20666 1.18089 1.21358 0.91650 0.93318 1.50582 0.94447 1.20038 0.94696 0.96204 0.96118 1.21977 0.84962 0.96168 1.01867 1.62343 1.08119 1.50816 1.01442 1.22866 0.96969 0.99082 0.93188 1.22994 0.92379 0.91916 0.94237 1.87699 1.66720 1.51931 1.22016 1.23303 0.96200 0.97615 0.86960 0.82666 1.23833 0.98742 0.97833 1.01375 1.23321 0.92188 1.02344 0.97110 0.87648 0.92380 0.96853 0.96565 0.91508 0.91277 0.88303 0.95043 0.91196 0.85650 0.88153 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 7 C -0.53 -30.75 9.66 25.60 0.25 -30.50 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.03 -1.51 3.49 29.85 0.10 -1.41 16 10 C 0.08 3.12 5.22 86.30 0.45 3.57 16 11 N -0.51 -17.03 4.92 -870.42 -4.28 -21.31 16 12 C 0.01 0.21 5.40 86.40 0.47 0.67 16 13 C 0.06 1.51 6.73 72.08 0.49 2.00 16 14 O -0.37 -10.57 10.85 -148.98 -1.62 -12.19 16 15 C 0.02 0.51 7.10 30.26 0.21 0.72 16 16 H 0.16 3.60 8.14 -2.39 -0.02 3.58 16 17 C -0.18 -4.31 9.96 30.58 0.30 -4.00 16 18 C -0.04 -1.24 5.14 44.93 0.23 -1.01 16 19 H 0.11 3.55 6.60 -2.38 -0.02 3.53 16 20 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 21 H 0.01 0.64 5.57 -2.38 -0.01 0.63 16 22 H 0.02 0.76 5.86 -2.39 -0.01 0.74 16 23 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 24 H 0.07 2.77 8.12 -2.39 -0.02 2.75 16 25 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.03 1.12 6.38 -2.39 -0.02 1.11 16 27 H 0.07 1.61 7.20 -2.39 -0.02 1.60 16 28 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.10 2.38 7.26 -2.38 -0.02 2.36 16 30 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -66.06 240.12 0.31 -65.75 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.06 Total: 8.97 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 2.97 Total: -28.97 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -3.98 Total: -80.54 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.62 Total: -12.19 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -66.06 0.31 -65.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306493110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.353 kcal (2) G-P(sol) polarization free energy of solvation -66.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds