Wall clock time and date at job start Thu Apr 9 2020 14:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47576 * 2 1 4 4 N 1.46495 * 109.47416 * 120.00230 * 2 1 3 5 5 C 1.36937 * 120.00026 * 275.00135 * 4 2 1 6 6 H 1.07994 * 119.99862 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99922 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00228 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99871 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47421 * 89.99557 * 9 7 5 11 11 H 1.48506 * 109.47143 * 209.99598 * 9 7 5 12 12 H 1.48505 * 109.47058 * 329.99663 * 9 7 5 13 13 C 1.50706 * 109.47027 * 240.00406 * 2 1 3 14 14 N 1.31072 * 126.65689 * 285.02671 * 13 2 1 15 15 N 1.28843 * 107.99150 * 179.97438 * 14 13 2 16 16 N 1.28736 * 109.39429 * 359.97438 * 15 14 13 17 17 N 1.29019 * 108.81236 * 359.74496 * 16 15 14 18 18 C 1.46502 * 126.44456 * 180.24656 * 17 16 15 19 19 H 1.08995 * 109.47610 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46975 * 299.99736 * 1 2 3 21 21 H 1.09001 * 109.47459 * 59.99810 * 1 2 3 22 22 H 0.97004 * 120.00061 * 94.99777 * 4 2 1 23 23 H 0.97003 * 120.00103 * 180.02562 * 8 7 5 24 24 H 1.09005 * 109.47182 * 270.18532 * 18 17 16 25 25 H 1.09003 * 109.46453 * 30.18101 * 18 17 16 26 26 H 1.08996 * 109.47366 * 150.18172 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0404 2.4241 7 6 2.6124 -0.6618 3.5089 8 7 2.9255 -1.9389 3.4498 9 14 2.7915 0.2702 5.1179 10 1 1.5242 0.1791 5.8865 11 1 3.8965 -0.3230 5.9132 12 1 3.0963 1.6954 4.8331 13 6 2.0323 -0.7104 -1.2306 14 7 2.0361 -2.0041 -1.4405 15 7 2.5432 -2.2167 -2.6057 16 7 2.8625 -1.0921 -3.1446 17 7 2.5578 -0.1390 -2.3301 18 6 2.7512 1.2953 -2.5575 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 2.2490 -1.6318 1.1525 23 1 3.2489 -2.3962 4.2418 24 1 3.7365 1.5907 -2.1968 25 1 2.6761 1.5074 -3.6240 26 1 1.9851 1.8548 -2.0209 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306548031.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:33 Heat of formation + Delta-G solvation = 103.553753 kcal Electronic energy + Delta-G solvation = -12423.812578 eV Core-core repulsion = 10153.872923 eV Total energy + Delta-G solvation = -2269.939655 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.15290 -37.68927 -36.54692 -34.46795 -32.52344 -30.27533 -29.17819 -26.27640 -25.16555 -23.90572 -21.88518 -19.49675 -18.30086 -18.13314 -17.01582 -16.18621 -15.57117 -14.74254 -14.56405 -14.51741 -14.13833 -13.60348 -13.24835 -13.14316 -12.78246 -12.63633 -12.46492 -12.16412 -11.93081 -11.80602 -11.75897 -11.16227 -10.90316 -9.14468 -7.93191 -5.27223 0.23186 1.15085 1.21768 1.52632 1.55045 1.62868 2.56947 3.06816 3.26598 3.44515 3.88295 4.04686 4.27391 4.36912 4.42922 4.48801 4.60946 4.82710 4.92705 5.02248 5.29290 5.44655 5.53111 6.23405 7.31238 7.58284 7.98457 8.23741 9.30251 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.052601 B = 0.009530 C = 0.009072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.182920 B = 2937.496283 C = 3085.659821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.252 3.748 3 H 0.104 0.896 4 N -0.732 5.732 5 C -0.244 4.244 6 H 0.098 0.902 7 C -0.076 4.076 8 N -0.972 5.972 9 Si 0.980 3.020 10 H -0.287 1.287 11 H -0.304 1.304 12 H -0.259 1.259 13 C 0.193 3.807 14 N -0.333 5.333 15 N -0.116 5.116 16 N -0.107 5.107 17 N -0.296 5.296 18 C 0.061 3.939 19 H 0.036 0.964 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.376 0.624 23 H 0.251 0.749 24 H 0.111 0.889 25 H 0.131 0.869 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 11.912 -9.816 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.122 0.878 4 N -0.373 5.373 5 C -0.375 4.375 6 H 0.116 0.884 7 C -0.268 4.268 8 N -0.622 5.622 9 Si 0.808 3.192 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.183 1.183 13 C -0.086 4.086 14 N -0.183 5.183 15 N -0.110 5.110 16 N -0.094 5.094 17 N -0.099 5.099 18 C -0.078 4.078 19 H 0.055 0.945 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.208 0.792 23 H 0.059 0.941 24 H 0.130 0.870 25 H 0.149 0.851 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.377 10.921 -10.490 15.328 hybrid contribution 0.272 0.245 1.309 1.359 sum -2.105 11.166 -9.181 14.608 Atomic orbital electron populations 1.22318 0.94516 1.01710 1.02765 1.19087 0.94155 0.94514 0.78243 0.87838 1.42623 1.78510 1.10657 1.05461 1.19729 1.35723 0.94954 0.87093 0.88418 1.25714 1.02337 0.96755 1.01989 1.69895 1.51933 1.10755 1.29590 0.85058 0.76646 0.78313 0.79169 1.21402 1.23094 1.18274 1.26977 0.98088 0.89936 0.93631 1.74928 1.19165 1.14273 1.09918 1.78524 1.13284 1.16831 1.02364 1.78612 1.19205 0.92673 1.18915 1.48797 1.38760 1.11745 1.10591 1.23020 1.07109 0.69664 1.07961 0.94470 0.90798 0.90318 0.79187 0.94065 0.87045 0.85098 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.47 71.98 0.68 -4.04 15 2 C 0.25 8.92 3.18 44.25 0.14 9.06 15 3 H 0.10 2.96 7.14 -2.39 -0.02 2.94 15 4 N -0.73 -35.63 5.11 -326.51 -1.67 -37.30 15 5 C -0.24 -12.51 9.93 84.03 0.83 -11.68 15 6 H 0.10 4.46 7.83 -2.91 -0.02 4.43 15 7 C -0.08 -4.18 5.50 84.86 0.47 -3.71 15 8 N -0.97 -59.83 13.06 21.65 0.28 -59.54 15 9 Si 0.98 43.94 29.55 68.60 2.03 45.97 15 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 15 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 15 12 H -0.26 -10.50 7.11 99.48 0.71 -9.80 15 13 C 0.19 7.01 6.91 138.14 0.95 7.97 15 14 N -0.33 -14.59 12.09 -50.45 -0.61 -15.20 15 15 N -0.12 -4.86 13.43 37.01 0.50 -4.37 15 16 N -0.11 -3.73 13.29 37.02 0.49 -3.24 15 17 N -0.30 -8.54 3.75 -359.63 -1.35 -9.89 15 18 C 0.06 0.85 11.04 127.77 1.41 2.26 15 19 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.38 21.23 7.57 -92.71 -0.70 20.53 15 23 H 0.25 15.02 8.31 -92.71 -0.77 14.25 15 24 H 0.11 1.30 8.14 -2.38 -0.02 1.28 15 25 H 0.13 1.12 8.14 -2.39 -0.02 1.10 15 26 H 0.13 1.13 7.41 -2.39 -0.02 1.11 15 Total: -1.00 -72.61 236.61 4.66 -67.95 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.49 Total: 15.77 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 4.49 Total: -0.15 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -2.35 Total: -129.54 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.61 4.66 -67.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306548031.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.507 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds