Wall clock time and date at job start Thu Apr 9 2020 14:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99473 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.09002 * 115.55710 * 9.31419 * 10 9 7 12 12 C 1.53062 * 117.51226 * 223.61022 * 10 9 7 13 13 C 1.52694 * 59.93505 * 252.53306 * 12 10 9 14 14 C 1.53243 * 117.88582 * 107.76994 * 13 12 10 15 15 C 1.53320 * 108.49190 * 196.25386 * 14 13 12 16 16 O 1.42877 * 109.32294 * 306.03530 * 15 14 13 17 17 C 1.42866 * 114.52379 * 64.36033 * 16 15 14 18 18 C 1.53253 * 117.87871 * 252.22488 * 13 12 10 19 19 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 21 21 H 1.09003 * 117.50614 * 0.02562 * 12 10 9 22 22 H 1.09003 * 117.50975 * 145.06219 * 12 10 9 23 23 H 1.09002 * 109.63321 * 315.95354 * 14 13 12 24 24 H 1.09005 * 109.63416 * 76.54948 * 14 13 12 25 25 H 1.09003 * 109.49769 * 186.08700 * 15 14 13 26 26 H 1.08997 * 109.50258 * 65.99239 * 15 14 13 27 27 H 1.09002 * 109.49345 * 175.68800 * 17 16 15 28 28 H 1.08994 * 109.52227 * 55.61175 * 17 16 15 29 29 H 1.08997 * 109.63101 * 283.44822 * 18 13 12 30 30 H 1.09000 * 109.63287 * 44.04528 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 3.1334 -3.5789 0.1597 12 6 1.5601 -4.7605 -0.9358 13 6 1.3466 -4.8819 0.5713 14 6 -0.0756 -4.6965 1.1109 15 6 0.0057 -4.4535 2.6226 16 8 0.7481 -5.5112 3.2322 17 6 2.1173 -5.5826 2.8307 18 6 2.1909 -5.9084 1.3342 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -2.3881 -0.0002 21 1 0.6879 -4.5424 -1.5521 22 1 2.3081 -5.4089 -1.3922 23 1 -0.5421 -3.8386 0.6267 24 1 -0.6616 -5.5946 0.9153 25 1 -1.0003 -4.4270 3.0414 26 1 0.5044 -3.5030 2.8120 27 1 2.6226 -6.3640 3.3984 28 1 2.6025 -4.6249 3.0187 29 1 1.7980 -6.9097 1.1576 30 1 3.2263 -5.8536 0.9979 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306652378.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:38 Heat of formation + Delta-G solvation = -18.732163 kcal Electronic energy + Delta-G solvation = -12865.348181 eV Core-core repulsion = 10661.353403 eV Total energy + Delta-G solvation = -2203.994778 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25358 -36.44897 -33.38125 -30.89935 -30.32125 -28.73208 -24.02203 -23.24191 -22.37362 -20.69241 -18.23999 -17.29837 -15.66990 -15.61674 -14.93463 -14.47550 -14.06639 -13.79730 -12.88443 -12.78142 -12.38472 -11.98638 -11.43636 -11.09316 -11.03454 -10.87173 -10.68598 -10.25574 -10.20552 -9.97807 -9.85583 -9.66523 -8.73914 -8.63181 -6.93175 -5.88805 -3.16721 3.38416 3.43084 3.44117 4.24993 4.47740 4.57057 5.11301 5.34390 5.38754 5.44189 5.48977 5.67373 5.71926 5.85586 5.95783 6.00912 6.07833 6.22530 6.26813 6.29862 6.41844 6.56942 6.66528 6.86428 6.89904 7.59967 7.61586 8.29916 9.40633 9.96289 10.30504 11.33125 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046570 B = 0.009821 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.095623 B = 2850.354838 C = 2974.144217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.685 5.685 10 C 0.159 3.841 11 H 0.100 0.900 12 C -0.221 4.221 13 C -0.174 4.174 14 C -0.106 4.106 15 C 0.067 3.933 16 O -0.392 6.392 17 C 0.066 3.934 18 C -0.107 4.107 19 H 0.258 0.742 20 H 0.387 0.613 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 -9.433 2.945 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.044 3.956 11 H 0.117 0.883 12 C -0.263 4.263 13 C -0.178 4.178 14 C -0.144 4.144 15 C -0.010 4.010 16 O -0.311 6.311 17 C -0.011 4.011 18 C -0.145 4.145 19 H 0.068 0.932 20 H 0.223 0.777 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.727 -9.299 3.085 10.170 hybrid contribution 0.156 0.967 -0.404 1.060 sum 2.883 -8.331 2.681 9.215 Atomic orbital electron populations 1.69654 1.05201 1.26189 1.56645 1.24796 0.95575 0.97937 1.02226 0.86197 0.78536 0.83062 0.77973 1.21572 1.21068 1.21080 1.19257 0.91212 0.83768 1.43881 0.90838 1.42073 1.05819 0.99211 1.84873 1.21024 0.94569 0.82090 0.97904 0.88257 1.23631 1.03927 1.07203 0.91501 1.21969 0.97236 1.03363 0.95189 1.21536 0.95057 1.01629 0.96147 1.22554 0.95811 0.90179 0.92408 1.87758 1.22367 1.53364 1.67642 1.22515 0.83259 1.00953 0.94373 1.21656 0.99222 0.98140 0.95462 0.93180 0.77691 0.89736 0.90188 0.90357 0.92342 0.89633 0.92203 0.89802 0.93025 0.91870 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.86 9.98 -15.06 -0.15 -7.01 16 8 H 0.07 1.94 7.82 -52.49 -0.41 1.52 16 9 N -0.68 -17.12 5.39 -53.53 -0.29 -17.40 16 10 C 0.16 3.25 6.29 -68.04 -0.43 2.82 16 11 H 0.10 1.97 8.12 -51.93 -0.42 1.55 16 12 C -0.22 -4.00 9.93 -26.86 -0.27 -4.27 16 13 C -0.17 -3.07 2.03 -154.55 -0.31 -3.39 16 14 C -0.11 -1.88 5.73 -26.44 -0.15 -2.03 16 15 C 0.07 1.16 6.84 37.32 0.26 1.42 16 16 O -0.39 -6.71 10.69 -35.23 -0.38 -7.08 16 17 C 0.07 0.98 6.84 37.33 0.26 1.24 16 18 C -0.11 -1.60 5.92 -26.43 -0.16 -1.75 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.39 10.18 6.04 -40.82 -0.25 9.94 16 21 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 22 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.08 1.54 6.16 -51.93 -0.32 1.22 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.91 8.08 -51.93 -0.42 0.50 16 LS Contribution 248.75 15.07 3.75 3.75 Total: -1.00 -29.11 248.75 -6.60 -35.71 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.34 Total: 8.15 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.05 Total: -13.31 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.44 Total: -44.19 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.11 -6.60 -35.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306652378.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.981 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds