Wall clock time and date at job start Thu Apr 9 2020 14:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2 11 11 C 1.48555 * 111.00357 * 54.58083 * 10 9 7 12 12 C 1.54379 * 104.59945 * 159.04028 * 11 10 9 13 13 H 1.08990 * 118.16212 * 115.84830 * 12 11 10 14 14 C 1.53001 * 118.12525 * 272.76989 * 12 11 10 15 15 H 1.09000 * 117.41059 * 344.00251 * 14 12 11 16 16 C 1.52999 * 117.44237 * 199.31079 * 14 12 11 17 17 O 1.42903 * 109.47104 * 115.77270 * 16 14 12 18 18 C 1.53003 * 60.54931 * 91.66377 * 14 12 11 19 19 H 1.08994 * 119.52834 * 113.28775 * 18 14 12 20 20 C 1.48562 * 110.99772 * 169.99418 * 10 9 7 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 23 23 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 24 24 H 1.09003 * 110.41023 * 277.81324 * 11 10 9 25 25 H 1.08998 * 110.41601 * 40.25776 * 11 10 9 26 26 H 1.09002 * 109.47247 * 235.76929 * 16 14 12 27 27 H 1.08988 * 109.47397 * 355.77022 * 16 14 12 28 28 H 0.96702 * 114.00326 * 179.97438 * 17 16 14 29 29 H 1.09000 * 110.41676 * 319.74030 * 20 10 9 30 30 H 1.09004 * 110.40941 * 82.06054 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 3.1626 -3.4990 1.1276 12 6 3.7084 -4.9296 1.3246 13 1 4.7695 -5.1043 1.1475 14 6 2.9300 -5.8792 2.2375 15 1 2.1922 -5.4384 2.9079 16 6 3.6747 -7.0977 2.7867 17 8 3.7678 -6.9978 4.2092 18 6 2.6234 -5.8567 0.7387 19 1 2.8536 -6.7311 0.1301 20 6 1.5135 -4.9081 0.2371 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5574 0.8881 23 1 0.6247 -2.5564 -0.8919 24 1 3.9720 -2.8154 0.8714 25 1 2.6488 -3.1610 2.0275 26 1 3.1323 -8.0051 2.5209 27 1 4.6763 -7.1347 2.3587 28 1 4.2288 -7.7386 4.6262 29 1 0.7415 -4.7906 0.9976 30 1 1.0793 -5.2844 -0.6892 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307365509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:55 Heat of formation + Delta-G solvation = -45.646156 kcal Electronic energy + Delta-G solvation = -12439.483401 eV Core-core repulsion = 10234.321545 eV Total energy + Delta-G solvation = -2205.161856 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03445 -37.79938 -36.19973 -34.27982 -29.71420 -29.39614 -27.19214 -24.99042 -22.46785 -21.44596 -21.28270 -18.84162 -18.22586 -17.30375 -16.20349 -15.70137 -15.61756 -15.33639 -15.13317 -14.26672 -14.12209 -13.58694 -13.39668 -12.99813 -12.74891 -12.42696 -12.37994 -11.95984 -11.85551 -11.41262 -11.02135 -10.77597 -10.65253 -10.58807 -9.38084 -8.76536 -6.47199 1.50576 1.59598 1.79347 2.44716 2.53444 2.92170 3.08846 3.36138 3.56742 3.81830 4.08113 4.17925 4.19133 4.32517 4.42455 4.52324 4.59440 4.64669 4.69460 4.83774 4.90147 5.02805 5.15544 5.25188 5.56634 5.85540 6.12237 6.29106 6.50461 6.94542 7.34496 8.63329 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058714 B = 0.007650 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.774760 B = 3659.113191 C = 3867.714538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.608 4.608 8 H 0.057 0.943 9 C 0.182 3.818 10 N -0.514 5.514 11 C 0.077 3.923 12 C -0.158 4.158 13 H 0.140 0.860 14 C -0.125 4.125 15 H 0.077 0.923 16 C 0.117 3.883 17 O -0.596 6.596 18 C -0.138 4.138 19 H 0.151 0.849 20 C 0.048 3.952 21 H 0.252 0.748 22 H -0.043 1.043 23 H 0.003 0.997 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.401 0.599 29 H 0.022 0.978 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -14.414 4.251 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.943 3.057 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.646 4.646 8 H 0.076 0.924 9 C 0.054 3.946 10 N -0.237 5.237 11 C -0.051 4.051 12 C -0.176 4.176 13 H 0.158 0.842 14 C -0.144 4.144 15 H 0.095 0.905 16 C 0.040 3.960 17 O -0.406 6.406 18 C -0.157 4.157 19 H 0.169 0.831 20 C -0.079 4.079 21 H 0.062 0.938 22 H -0.026 1.026 23 H 0.021 0.979 24 H 0.091 0.909 25 H 0.031 0.969 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.252 0.748 29 H 0.040 0.960 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.630 -12.211 3.595 15.379 hybrid contribution -0.638 -1.885 0.791 2.141 sum 7.992 -14.096 4.386 16.787 Atomic orbital electron populations 1.70929 1.07956 1.29603 1.48676 1.27542 0.96527 1.06913 0.92451 0.82871 0.74068 0.70634 0.78124 1.20616 1.19416 1.19165 1.22325 0.94963 0.92187 1.55134 0.92436 1.19712 0.91347 0.90747 0.92755 1.65483 1.15203 1.01734 1.41322 1.22324 0.95728 0.95747 0.91269 1.23684 0.98317 0.90451 1.05171 0.84238 1.22421 1.01271 0.98830 0.91897 0.90495 1.21586 0.99116 0.94641 0.80646 1.86453 1.81932 1.51800 1.20369 1.23437 0.96974 1.00576 0.94708 0.83125 1.22763 0.95152 0.90138 0.99893 0.93834 1.02592 0.97897 0.90905 0.96900 0.90731 0.91180 0.74805 0.96019 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.58 13.65 21.45 0.29 -59.29 16 2 C -0.04 -2.20 5.46 84.66 0.46 -1.74 16 3 Si 1.12 51.51 29.90 68.60 2.05 53.56 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.61 -36.30 8.58 25.60 0.22 -36.08 16 8 H 0.06 3.36 6.64 -2.91 -0.02 3.34 16 9 C 0.18 10.25 4.13 85.56 0.35 10.60 16 10 N -0.51 -24.02 5.48 -886.05 -4.86 -28.88 16 11 C 0.08 3.29 5.34 86.45 0.46 3.75 16 12 C -0.16 -4.94 6.74 -9.89 -0.07 -5.01 16 13 H 0.14 3.62 8.12 -2.39 -0.02 3.60 16 14 C -0.13 -3.52 5.60 -10.79 -0.06 -3.58 16 15 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 16 C 0.12 2.25 7.32 71.98 0.53 2.78 16 17 O -0.60 -12.54 13.66 -148.98 -2.04 -14.57 16 18 C -0.14 -3.97 6.84 -9.90 -0.07 -4.04 16 19 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 20 C 0.05 1.82 6.29 86.45 0.54 2.37 16 21 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 22 H -0.04 -2.62 7.74 -2.39 -0.02 -2.64 16 23 H 0.00 0.18 8.01 -2.39 -0.02 0.16 16 24 H 0.07 3.19 7.21 -2.39 -0.02 3.18 16 25 H 0.01 0.60 8.00 -2.39 -0.02 0.58 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.08 7.94 -2.39 -0.02 1.06 16 28 H 0.40 3.84 9.12 -74.06 -0.68 3.17 16 29 H 0.02 0.88 7.82 -2.39 -0.02 0.86 16 30 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -72.87 250.70 -1.63 -74.50 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.55 Total: 5.62 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 2.37 Total: -30.94 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -4.56 Total: -88.17 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -2.04 Total: -14.57 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Total: -72.87 -1.63 -74.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307365509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.850 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds