Wall clock time and date at job start Thu Apr 9 2020 14:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48494 * 109.47518 * 270.00456 * 3 2 1 5 5 H 1.48506 * 109.47007 * 30.00608 * 3 2 1 6 6 H 1.48500 * 109.46969 * 150.00002 * 3 2 1 7 7 C 1.38811 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99859 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00377 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00434 * 179.97438 * 9 7 2 11 11 H 1.09002 * 115.54571 * 9.32972 * 10 9 7 12 12 C 1.53075 * 117.53393 * 223.61437 * 10 9 7 13 13 C 1.52997 * 59.98421 * 252.52824 * 12 10 9 14 14 H 1.08998 * 117.50072 * 252.50092 * 13 12 10 15 15 C 1.53004 * 117.49820 * 107.50006 * 13 12 10 16 16 H 1.09002 * 110.27448 * 350.55317 * 15 13 12 17 17 C 1.54945 * 110.39100 * 112.69909 * 15 13 12 18 18 C 1.55304 * 100.94045 * 155.40253 * 17 15 13 19 19 C 1.54376 * 102.25567 * 325.86882 * 18 17 15 20 20 O 1.43240 * 107.58930 * 21.35352 * 19 18 17 21 21 H 0.96993 * 120.00232 * 359.97438 * 1 2 3 22 22 H 0.97003 * 120.00038 * 359.97438 * 9 7 2 23 23 H 1.09002 * 117.49026 * 145.04364 * 12 10 9 24 24 H 1.08992 * 117.51385 * 0.02562 * 12 10 9 25 25 H 1.08997 * 111.12470 * 273.31972 * 17 15 13 26 26 H 1.08995 * 111.12619 * 37.48960 * 17 15 13 27 27 H 1.08998 * 110.85543 * 207.67443 * 18 17 15 28 28 H 1.09009 * 111.02412 * 84.13543 * 18 17 15 29 29 H 1.08999 * 109.83271 * 261.84174 * 19 18 17 30 30 H 1.08999 * 109.91049 * 140.90833 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5070 -3.3631 -0.1599 12 6 5.3168 -2.5923 0.9367 13 6 5.5309 -2.4674 -0.5730 14 1 5.8588 -3.3574 -1.1102 15 6 6.0761 -1.1392 -1.1017 16 1 6.0819 -0.3910 -0.3091 17 6 7.5043 -1.3303 -1.6714 18 6 7.5830 -0.1460 -2.6729 19 6 6.1293 -0.0515 -3.1837 20 8 5.2872 -0.6830 -2.2121 21 1 -0.4850 0.8400 0.0004 22 1 3.8647 -0.3620 0.0004 23 1 5.5034 -3.5646 1.3928 24 1 5.5641 -1.7285 1.5536 25 1 8.2559 -1.2329 -0.8880 26 1 7.5973 -2.2866 -2.1859 27 1 8.2673 -0.3738 -3.4902 28 1 7.8773 0.7743 -2.1681 29 1 6.0394 -0.5655 -4.1407 30 1 5.8429 0.9940 -3.2974 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:56 Heat of formation + Delta-G solvation = -9.245659 kcal Electronic energy + Delta-G solvation = -12830.638223 eV Core-core repulsion = 10627.054811 eV Total energy + Delta-G solvation = -2203.583412 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.29944 -36.68706 -33.08408 -31.84670 -30.36432 -28.68113 -23.55264 -22.92437 -21.45348 -20.93465 -19.34554 -17.64827 -16.37932 -15.83610 -14.91226 -14.39657 -14.19157 -13.59691 -13.05948 -12.57884 -12.45471 -11.78714 -11.51748 -11.26020 -11.22318 -11.08181 -10.88404 -10.69573 -10.30870 -10.14348 -9.61534 -9.42588 -9.10554 -8.67189 -7.07987 -5.75381 -3.08319 3.41337 3.46827 3.48931 3.98198 4.62630 4.62800 4.78559 4.84433 5.03569 5.23369 5.30875 5.41549 5.56329 5.69158 5.72359 5.80272 5.84536 5.93426 5.96464 6.07349 6.14618 6.31994 6.35978 6.69997 6.78748 7.47311 8.02032 8.44723 9.22723 9.95457 10.14771 11.42536 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.012698 C = 0.010425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.559603 B = 2204.594463 C = 2685.217005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.702 5.702 10 C 0.171 3.829 11 H 0.109 0.891 12 C -0.223 4.223 13 C -0.204 4.204 14 H 0.099 0.901 15 C 0.118 3.882 16 H 0.061 0.939 17 C -0.146 4.146 18 C -0.158 4.158 19 C 0.046 3.954 20 O -0.356 6.356 21 H 0.260 0.740 22 H 0.367 0.633 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.859 -1.763 -3.388 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.057 3.943 11 H 0.127 0.873 12 C -0.265 4.265 13 C -0.225 4.225 14 H 0.117 0.883 15 C 0.061 3.939 16 H 0.079 0.921 17 C -0.184 4.184 18 C -0.195 4.195 19 C -0.031 4.031 20 O -0.275 6.275 21 H 0.070 0.930 22 H 0.200 0.800 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.296 -1.787 -3.417 15.774 hybrid contribution 1.033 1.312 -0.035 1.670 sum 16.329 -0.476 -3.452 16.696 Atomic orbital electron populations 1.69699 1.05060 1.25889 1.57184 1.24636 0.95228 0.97209 1.01694 0.86530 0.78988 0.84925 0.78003 1.20716 1.21790 1.20612 1.19112 0.80253 0.94951 1.43183 0.88889 1.42258 1.03942 1.01377 1.86163 1.20816 0.85115 0.91303 0.97106 0.87301 1.23634 1.10060 1.01843 0.90936 1.22869 1.06947 0.96720 0.96008 0.88323 1.22275 0.88312 0.94190 0.89151 0.92112 1.23280 0.97756 0.98702 0.98677 1.23131 0.97645 0.99170 0.99585 1.23087 0.89136 0.97819 0.93063 1.88681 1.31685 1.76697 1.30440 0.93007 0.79970 0.89433 0.89787 0.90365 0.90430 0.90486 0.90909 0.91760 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.89 23.20 27.74 -169.99 -4.71 18.48 16 4 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -6.98 6.52 56.52 0.37 -6.62 16 7 C -0.25 -7.19 10.46 -15.06 -0.16 -7.35 16 8 H 0.09 2.86 8.05 -52.48 -0.42 2.44 16 9 N -0.70 -17.72 4.93 -53.39 -0.26 -17.98 16 10 C 0.17 3.54 6.57 -67.89 -0.45 3.09 16 11 H 0.11 2.20 8.12 -51.93 -0.42 1.78 16 12 C -0.22 -3.80 10.12 -26.69 -0.27 -4.07 16 13 C -0.20 -3.50 5.46 -90.62 -0.50 -3.99 16 14 H 0.10 1.52 7.99 -51.93 -0.41 1.10 16 15 C 0.12 2.00 2.71 -25.70 -0.07 1.93 16 16 H 0.06 1.09 7.65 -51.93 -0.40 0.69 16 17 C -0.15 -1.85 6.57 -24.48 -0.16 -2.02 16 18 C -0.16 -1.85 7.02 -24.79 -0.17 -2.02 16 19 C 0.05 0.68 7.79 37.88 0.30 0.98 16 20 O -0.36 -6.97 10.56 -35.23 -0.37 -7.34 16 21 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 22 H 0.37 9.25 4.61 -40.82 -0.19 9.06 16 23 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 249.74 15.07 3.76 3.76 Total: -1.00 -32.32 249.74 -6.77 -39.09 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.38 Total: 6.34 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.57 Total: -13.28 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.51 Total: -47.05 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.37 Total: -7.34 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.71 Total: 18.48 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.32 -6.77 -39.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.845 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds