Wall clock time and date at job start Thu Apr 9 2020 14:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 13 13 H 1.09000 * 109.30325 * 180.02562 * 12 2 1 14 14 C 1.52925 * 109.30334 * 299.58818 * 12 2 1 15 15 C 1.53270 * 108.71333 * 171.25859 * 14 12 2 16 16 C 1.53066 * 108.24707 * 292.17783 * 15 14 12 17 17 C 1.50186 * 109.88951 * 48.97089 * 16 15 14 18 18 O 1.21283 * 118.24463 * 162.43559 * 17 16 15 19 19 N 1.33352 * 123.50699 * 342.41521 * 17 16 15 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.59988 * 290.82147 * 14 12 2 25 25 H 1.09006 * 109.60138 * 51.30209 * 14 12 2 26 26 H 1.09000 * 109.70195 * 172.53772 * 15 14 12 27 27 H 1.08994 * 109.85100 * 51.91405 * 15 14 12 28 28 H 1.09001 * 109.40732 * 288.84180 * 16 15 14 29 29 H 1.08994 * 109.40262 * 169.09526 * 16 15 14 30 30 H 0.96999 * 117.94777 * 182.23868 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0400 -0.7212 1.2493 13 1 3.1300 -0.7191 1.2467 14 6 1.5367 0.0088 2.4952 15 6 1.8662 -0.8393 3.7287 16 6 1.0132 -2.1093 3.6789 17 6 1.1175 -2.7419 2.3208 18 8 0.7807 -3.9008 2.2000 19 7 1.5603 -2.0975 1.2405 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 2.0322 0.9761 2.5775 25 1 0.4584 0.1524 2.4243 26 1 1.6350 -0.2772 4.6335 27 1 2.9229 -1.1064 3.7227 28 1 -0.0273 -1.8549 3.8809 29 1 1.3658 -2.8121 4.4337 30 1 1.5631 -2.5745 0.3960 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218786.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:16 Heat of formation + Delta-G solvation = -60.697906 kcal Electronic energy + Delta-G solvation = -13012.167202 eV Core-core repulsion = 10806.352653 eV Total energy + Delta-G solvation = -2205.814549 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74801 -36.60663 -33.90798 -32.27366 -30.69192 -27.87227 -25.38644 -23.99361 -22.14863 -19.93884 -18.43833 -16.45305 -16.28944 -15.26604 -14.99360 -14.49966 -13.78010 -13.53646 -13.23791 -12.81008 -12.49305 -11.96561 -11.31646 -11.18164 -10.95092 -10.73236 -10.61682 -10.41898 -10.19564 -10.14252 -9.69405 -9.09319 -8.88046 -8.43038 -8.14946 -6.07935 -4.16408 3.24228 3.28170 3.33039 3.36250 4.07651 4.36774 5.04565 5.10095 5.12523 5.24425 5.40713 5.76086 5.87943 5.99615 6.07636 6.14179 6.31611 6.48421 6.60493 6.84704 7.04295 7.26157 7.48842 7.63504 7.83029 8.00683 8.19469 8.33336 8.85673 8.90067 9.50036 10.97329 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048168 B = 0.010971 C = 0.009827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.153373 B = 2551.581262 C = 2848.750475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.143 3.857 13 H 0.062 0.938 14 C -0.137 4.137 15 C -0.123 4.123 16 C -0.133 4.133 17 C 0.510 3.490 18 O -0.587 6.587 19 N -0.689 5.689 20 H 0.027 0.973 21 H 0.081 0.919 22 H 0.010 0.990 23 H 0.262 0.738 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 0.226 9.069 9.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.057 0.943 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.039 3.961 13 H 0.080 0.920 14 C -0.175 4.175 15 C -0.161 4.161 16 C -0.173 4.173 17 C 0.296 3.704 18 O -0.469 6.469 19 N -0.339 5.339 20 H 0.046 0.954 21 H 0.100 0.900 22 H 0.029 0.971 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.148 -0.096 9.062 9.135 hybrid contribution 0.308 -0.475 -1.271 1.392 sum 1.456 -0.571 7.791 7.946 Atomic orbital electron populations 1.21835 0.98348 0.99243 1.00072 1.19002 0.93259 0.95934 0.90178 0.94306 1.21045 1.31745 1.12717 0.90607 0.92614 1.24931 0.94793 0.94865 0.99024 1.69863 1.36180 1.22723 1.23616 0.86674 0.79209 0.79912 0.82340 1.20177 1.21296 1.20243 1.21236 0.97378 0.80670 0.96831 0.92023 1.22057 1.02818 0.98940 0.93687 1.21667 0.99866 0.95648 0.98882 1.21595 1.02479 0.98218 0.95021 1.20083 0.77015 0.86311 0.86963 1.90688 1.51777 1.17959 1.86479 1.45716 1.62367 1.14867 1.10955 0.95411 0.89986 0.97090 0.92837 0.90549 0.90547 0.91357 0.91569 0.88926 0.89158 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.49 37.16 0.32 -2.83 16 2 C 0.04 0.80 2.17 -91.78 -0.20 0.60 16 3 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.52 -13.38 7.74 -34.44 -0.27 -13.64 16 5 H 0.06 1.40 7.17 -52.49 -0.38 1.03 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.14 2.68 2.77 -68.37 -0.19 2.49 16 13 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.14 -2.08 5.15 -26.63 -0.14 -2.22 16 15 C -0.12 -1.56 6.04 -26.56 -0.16 -1.72 16 16 C -0.13 -1.90 6.02 -28.10 -0.17 -2.07 16 17 C 0.51 9.69 7.71 -11.87 -0.09 9.60 16 18 O -0.59 -13.28 17.78 5.56 0.10 -13.18 16 19 N -0.69 -13.47 4.35 -54.84 -0.24 -13.71 16 20 H 0.03 0.64 7.61 -51.93 -0.40 0.24 16 21 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 22 H 0.01 0.21 6.25 -51.93 -0.32 -0.11 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.21 5.99 -51.93 -0.31 0.90 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.41 8.67 7.28 -40.82 -0.30 8.38 16 LS Contribution 241.36 15.07 3.64 3.64 Total: -1.00 -28.79 241.36 -6.00 -34.79 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.11 Total: 4.58 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -0.99 Total: -8.12 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.39 Total: -37.44 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.10 Total: -13.18 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.79 -6.00 -34.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218786.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.911 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds