Wall clock time and date at job start Thu Apr 9 2020 14:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47125 * 2 1 4 4 C 1.53002 * 109.47566 * 120.00042 * 2 1 3 5 5 C 1.53000 * 109.47050 * 180.02562 * 4 2 1 6 6 N 1.46490 * 109.47311 * 60.00058 * 5 4 2 7 7 C 1.36935 * 120.00121 * 154.99465 * 6 5 4 8 8 H 1.07997 * 120.00139 * 0.02562 * 7 6 5 9 9 C 1.38816 * 120.00401 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99569 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47055 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.46653 * 299.99639 * 11 9 7 14 14 H 1.48495 * 109.47483 * 60.00002 * 11 9 7 15 15 C 1.53002 * 109.47269 * 299.99838 * 5 4 2 16 16 C 1.53009 * 109.46735 * 60.00285 * 15 5 4 17 17 H 1.08998 * 109.47190 * 60.00225 * 16 15 5 18 18 C 1.53002 * 109.46735 * 180.02562 * 16 15 5 19 19 C 1.52998 * 109.47053 * 240.00443 * 2 1 3 20 20 H 1.09002 * 109.46979 * 299.99445 * 1 2 3 21 21 H 1.08990 * 109.47430 * 59.99765 * 1 2 3 22 22 H 1.09007 * 109.46894 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46631 * 60.00297 * 4 2 1 24 24 H 1.08993 * 109.47266 * 300.00130 * 4 2 1 25 25 H 1.08997 * 109.46857 * 180.02562 * 5 4 2 26 26 H 0.97000 * 120.00577 * 335.00065 * 6 5 4 27 27 H 0.97001 * 119.99885 * 359.97438 * 10 9 7 28 28 H 1.08996 * 109.47299 * 179.97438 * 15 5 4 29 29 H 1.08998 * 109.47621 * 300.00502 * 15 5 4 30 30 H 1.09002 * 109.46512 * 179.97438 * 18 16 15 31 31 H 1.08996 * 109.47299 * 299.99523 * 18 16 15 32 32 H 1.08998 * 109.47097 * 60.00168 * 18 16 15 33 33 H 1.08998 * 109.47317 * 299.99808 * 19 2 1 34 34 H 1.09002 * 109.47294 * 60.00021 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2494 6 7 4.0579 0.6607 1.2497 7 6 5.2992 0.9484 1.7512 8 1 5.9188 0.1569 2.1461 9 6 5.7613 2.2574 1.7520 10 7 5.0059 3.2221 1.2711 11 14 7.4549 2.6496 2.4355 12 1 7.7086 4.1084 2.3223 13 1 7.5181 2.2460 3.8632 14 1 8.4840 1.9065 1.6649 15 6 4.0806 -1.4415 0.0002 16 6 3.5705 -0.7202 -1.2491 17 1 3.9334 0.3076 -1.2489 18 6 4.0804 -1.4414 -2.4984 19 6 2.0400 -0.7211 -1.2493 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6768 -1.7489 1.2491 24 1 1.6768 -0.2075 2.1392 25 1 3.9335 -1.2348 2.1391 26 1 3.5016 1.3716 0.8948 27 1 4.1266 3.0183 0.9159 28 1 5.1706 -1.4407 0.0001 29 1 3.7177 -2.4693 -0.0002 30 1 3.7166 -0.9278 -3.3883 31 1 5.1704 -1.4413 -2.4985 32 1 3.7171 -2.4690 -2.4983 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082835006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:31 Heat of formation + Delta-G solvation = -23.005744 kcal Electronic energy + Delta-G solvation = -13330.141379 eV Core-core repulsion = 11261.794380 eV Total energy + Delta-G solvation = -2068.347000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80112 -34.21571 -33.01233 -31.44225 -28.01048 -26.29028 -25.77511 -23.34442 -21.14777 -20.08053 -18.64984 -17.07963 -15.07165 -14.76363 -14.39191 -13.75250 -13.48264 -13.44116 -12.99231 -12.27649 -12.09168 -11.88608 -11.45744 -11.33294 -11.19392 -10.78581 -10.63403 -10.59910 -10.26026 -9.98674 -9.72908 -9.67529 -9.41007 -9.05214 -8.77803 -6.92464 -6.02578 -3.00480 3.54912 3.58584 3.75911 4.73510 5.10472 5.16797 5.24919 5.51578 5.62262 5.68617 5.72028 5.78786 5.90053 5.97618 6.04578 6.10245 6.17592 6.18791 6.22644 6.36129 6.36497 6.41918 6.47742 6.60062 6.77968 6.90652 6.97545 7.07666 7.16710 7.89409 8.83498 9.32980 10.19266 10.35875 11.46034 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038901 B = 0.010892 C = 0.009802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.609188 B = 2570.073882 C = 2855.731853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.117 4.117 5 C 0.178 3.822 6 N -0.732 5.732 7 C -0.324 4.324 8 H 0.062 0.938 9 C -0.048 4.048 10 N -0.947 5.947 11 Si 1.078 2.922 12 H -0.286 1.286 13 H -0.297 1.297 14 H -0.297 1.297 15 C -0.125 4.125 16 C -0.087 4.087 17 H 0.079 0.921 18 C -0.143 4.143 19 C -0.101 4.101 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.367 0.633 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 -8.764 -4.111 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.155 4.155 5 C 0.069 3.931 6 N -0.376 5.376 7 C -0.455 4.455 8 H 0.080 0.920 9 C -0.245 4.245 10 N -0.593 5.593 11 Si 0.909 3.091 12 H -0.211 1.211 13 H -0.224 1.224 14 H -0.224 1.224 15 C -0.165 4.165 16 C -0.106 4.106 17 H 0.097 0.903 18 C -0.200 4.200 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.201 0.799 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.845 -7.693 -3.712 9.820 hybrid contribution -1.190 -1.112 -0.423 1.683 sum -6.036 -8.805 -4.134 11.448 Atomic orbital electron populations 1.21828 0.96128 1.01019 1.01175 1.21072 0.94316 1.00417 0.95222 0.90935 1.21837 0.97067 0.99354 0.97222 1.20157 0.90915 0.87187 0.94877 1.42482 1.17968 1.02457 1.74675 1.20058 0.93725 0.95235 1.36512 0.91980 1.25694 1.05798 0.91445 1.01593 1.70880 1.11328 1.33124 1.43991 0.83265 0.74496 0.75909 0.75410 1.21138 1.22413 1.22417 1.22151 1.00686 0.97198 0.96513 1.21015 0.94312 1.01058 0.94191 0.90297 1.21813 1.00837 0.99644 0.97712 1.21595 0.95843 0.99537 0.96917 0.92984 0.93199 0.93235 0.92650 0.92355 0.93747 0.79879 0.93519 0.92416 0.94003 0.93529 0.93017 0.93572 0.92871 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 2 C -0.09 -1.50 2.55 -90.62 -0.23 -1.73 16 3 H 0.07 1.37 6.50 -51.93 -0.34 1.03 16 4 C -0.12 -2.02 4.89 -26.73 -0.13 -2.15 16 5 C 0.18 3.68 3.10 -67.93 -0.21 3.47 16 6 N -0.73 -18.44 4.27 -53.43 -0.23 -18.67 16 7 C -0.32 -9.21 9.93 -15.06 -0.15 -9.36 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 C -0.05 -1.42 5.50 -17.43 -0.10 -1.51 16 10 N -0.95 -29.67 13.70 55.49 0.76 -28.91 16 11 Si 1.08 26.43 29.92 -169.99 -5.09 21.34 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 15 C -0.13 -2.34 4.89 -26.73 -0.13 -2.47 16 16 C -0.09 -1.54 2.57 -90.59 -0.23 -1.77 16 17 H 0.08 1.67 7.60 -51.93 -0.39 1.28 16 18 C -0.14 -2.15 9.19 37.16 0.34 -1.81 16 19 C -0.10 -1.57 4.49 -26.71 -0.12 -1.69 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 26 H 0.37 9.53 4.89 -40.82 -0.20 9.33 16 27 H 0.25 7.84 6.77 -40.82 -0.28 7.56 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 264.89 15.07 3.99 3.99 Total: -1.00 -30.36 264.89 -7.09 -37.45 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.91 Total: 5.43 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -0.62 Total: -20.63 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.53 Total: -47.58 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -5.09 Total: 21.34 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.36 -7.09 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082835006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.442 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds