Wall clock time and date at job start Thu Apr 9 2020 14:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46790 * 2 1 4 4 H 1.09000 * 110.43942 * 52.45719 * 3 2 1 5 5 C 1.54884 * 110.48444 * 289.77303 * 3 2 1 6 6 C 1.54894 * 102.74702 * 203.38159 * 5 3 2 7 7 C 1.54266 * 104.19690 * 37.94277 * 6 5 3 8 8 H 1.09002 * 110.03255 * 217.10664 * 7 6 5 9 9 N 1.46503 * 110.07197 * 95.69521 * 7 6 5 10 10 C 1.36937 * 119.99958 * 87.12274 * 9 7 6 11 11 H 1.08005 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.38807 * 120.00354 * 179.97438 * 10 9 7 13 13 N 1.31617 * 119.99780 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00399 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47391 * 89.99951 * 14 12 10 16 16 H 1.48506 * 109.47069 * 210.00367 * 14 12 10 17 17 H 1.48500 * 109.47125 * 329.99905 * 14 12 10 18 18 C 1.53873 * 106.59800 * 336.38910 * 7 6 5 19 19 H 1.08996 * 110.03511 * 240.71406 * 18 7 6 20 20 C 1.52999 * 110.03203 * 119.33391 * 18 7 6 21 21 H 1.08992 * 109.47301 * 60.00633 * 1 2 3 22 22 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47654 * 299.99899 * 1 2 3 24 24 H 1.08992 * 109.47299 * 239.99799 * 2 1 3 25 25 H 1.09001 * 109.47054 * 119.99397 * 2 1 3 26 26 H 1.08996 * 110.75718 * 321.69186 * 5 3 2 27 27 H 1.08991 * 110.75873 * 84.88139 * 5 3 2 28 28 H 1.08998 * 110.48844 * 279.26280 * 6 5 3 29 29 H 1.09001 * 110.48508 * 156.62189 * 6 5 3 30 30 H 0.97000 * 119.99831 * 267.11727 * 9 7 6 31 31 H 0.97001 * 120.00434 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47184 * 61.45250 * 20 18 7 33 33 H 1.08998 * 109.47314 * 181.45798 * 20 18 7 34 34 H 1.09003 * 109.47097 * 301.45645 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5799 2.0088 0.8098 5 6 1.7577 2.1171 -1.3654 6 6 2.8152 3.2480 -1.4128 7 6 4.0701 2.6197 -0.7723 8 1 4.5956 3.3633 -0.1732 9 7 4.9576 2.0963 -1.8137 10 6 5.8862 2.9161 -2.3975 11 1 5.9640 3.9487 -2.0905 12 6 6.7276 2.4202 -3.3839 13 7 6.6332 1.1618 -3.7577 14 14 7.9938 3.5387 -4.1808 15 1 9.2636 3.4745 -3.4136 16 1 8.2361 3.0960 -5.5774 17 1 7.4881 4.9350 -4.1849 18 6 3.5771 1.4718 0.1260 19 1 3.8635 1.6582 1.1610 20 6 4.1684 0.1432 -0.3496 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.9090 1.4124 -2.1830 27 1 0.7482 2.5270 -1.3924 28 1 2.4805 4.1078 -0.8325 29 1 3.0176 3.5380 -2.4438 30 1 4.8876 1.1690 -2.0897 31 1 7.2213 0.8150 -4.4467 32 1 5.2554 0.1832 -0.2792 33 1 3.7932 -0.6664 0.2764 34 1 3.8777 -0.0338 -1.3852 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083049257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:26 Heat of formation + Delta-G solvation = -9.481813 kcal Electronic energy + Delta-G solvation = -13193.795935 eV Core-core repulsion = 11126.035377 eV Total energy + Delta-G solvation = -2067.760558 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 4.62 seconds Orbital eigenvalues (eV) -38.83777 -34.27649 -32.21676 -30.61368 -29.69760 -26.14043 -24.67940 -23.25442 -22.33027 -19.24142 -17.90113 -17.22320 -15.54004 -14.82545 -14.17670 -13.98683 -13.75287 -12.95799 -12.62626 -12.46212 -12.00921 -11.69853 -11.26686 -11.22236 -10.89145 -10.84449 -10.55869 -10.36152 -10.05509 -10.00842 -9.96790 -9.79210 -9.60201 -9.40674 -8.80188 -6.84134 -5.70446 -2.97042 3.46831 3.52092 3.53612 4.65102 5.05025 5.12900 5.18926 5.49727 5.61350 5.63977 5.70292 5.93354 5.94533 6.04370 6.05862 6.17713 6.19095 6.21972 6.28557 6.38500 6.52400 6.54094 6.67527 6.72933 6.80671 6.94461 6.96284 7.10663 7.26413 7.77511 8.50364 9.60811 10.22795 10.57274 11.52698 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.061242 B = 0.008924 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.092198 B = 3136.919181 C = 3285.295122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.064 0.936 5 C -0.111 4.111 6 C -0.146 4.146 7 C 0.175 3.825 8 H 0.044 0.956 9 N -0.723 5.723 10 C -0.235 4.235 11 H 0.068 0.932 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.905 3.095 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 C -0.097 4.097 19 H 0.060 0.940 20 C -0.136 4.136 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.388 0.612 31 H 0.254 0.746 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 -0.927 7.341 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.106 4.106 4 H 0.083 0.917 5 C -0.149 4.149 6 C -0.187 4.187 7 C 0.065 3.935 8 H 0.062 0.938 9 N -0.366 5.366 10 C -0.367 4.367 11 H 0.086 0.914 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.736 3.264 15 H -0.219 1.219 16 H -0.219 1.219 17 H -0.209 1.209 18 C -0.117 4.117 19 H 0.078 0.922 20 C -0.193 4.193 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.745 -0.803 7.274 12.187 hybrid contribution 0.699 0.368 -0.616 1.002 sum -9.047 -0.435 6.658 11.241 Atomic orbital electron populations 1.21802 0.96739 1.00840 1.01477 1.21641 0.94813 0.97010 1.01929 1.22025 0.95600 0.95238 0.97719 0.91719 1.22453 0.97681 0.98091 0.96645 1.23104 0.97198 0.96572 1.01827 1.20814 0.90083 0.92984 0.89660 0.93763 1.42806 1.39055 1.12131 1.42649 1.19304 1.09546 0.93408 1.14400 0.91387 1.24706 1.00222 0.96260 0.99988 1.69657 1.41571 1.13191 1.33999 0.86218 0.81781 0.79765 0.78629 1.21859 1.21886 1.20878 1.22012 0.93873 0.96797 0.98989 0.92165 1.21733 1.01437 0.95371 1.00760 0.92764 0.93400 0.93289 0.91493 0.92411 0.91738 0.93153 0.93536 0.91198 0.77411 0.93649 0.91938 0.93990 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.79 37.16 0.36 -1.37 16 2 C -0.12 -1.55 4.11 -26.73 -0.11 -1.66 16 3 C -0.09 -1.30 2.77 -88.96 -0.25 -1.55 16 4 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.11 -1.81 5.67 -24.74 -0.14 -1.95 16 6 C -0.15 -2.74 6.54 -25.07 -0.16 -2.91 16 7 C 0.18 3.63 3.53 -66.81 -0.24 3.39 16 8 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 9 N -0.72 -18.35 4.55 -52.34 -0.24 -18.59 16 10 C -0.24 -6.64 9.96 -15.06 -0.15 -6.79 16 11 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 12 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 13 N -0.94 -28.52 13.06 55.49 0.72 -27.79 16 14 Si 0.90 22.74 29.55 -169.99 -5.02 17.72 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 C -0.10 -1.69 3.42 -89.50 -0.31 -2.00 16 19 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.14 -2.45 6.62 37.16 0.25 -2.20 16 21 H 0.05 0.63 7.55 -51.93 -0.39 0.23 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.96 6.83 -51.93 -0.35 0.61 16 25 H 0.06 0.73 7.40 -51.93 -0.38 0.35 16 26 H 0.06 1.14 7.97 -51.93 -0.41 0.73 16 27 H 0.05 0.72 8.05 -51.93 -0.42 0.31 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 30 H 0.39 10.29 4.97 -40.82 -0.20 10.09 16 31 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.06 1.27 7.79 -51.93 -0.40 0.87 16 33 H 0.04 0.64 6.62 -51.93 -0.34 0.30 16 34 H 0.06 1.18 6.34 -51.93 -0.33 0.85 16 LS Contribution 262.91 15.07 3.96 3.96 Total: -1.00 -29.47 262.91 -7.16 -36.63 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.74 Total: 5.67 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.84 Total: -17.60 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.49 Total: -46.38 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.47 -7.16 -36.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.147 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds