Wall clock time and date at job start Thu Apr 9 2020 14:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 H 1.09001 * 110.43661 * 303.91462 * 3 2 1 5 5 C 1.54892 * 110.48655 * 66.45679 * 3 2 1 6 6 C 1.54891 * 102.74959 * 156.61985 * 5 3 2 7 7 C 1.54266 * 104.31343 * 321.99283 * 6 5 3 8 8 H 1.09004 * 110.03276 * 264.39171 * 7 6 5 9 9 N 1.46498 * 110.03576 * 142.96109 * 7 6 5 10 10 C 1.36932 * 119.99974 * 86.45063 * 9 7 6 11 11 H 1.08008 * 120.00294 * 0.02562 * 10 9 7 12 12 C 1.38808 * 120.00147 * 180.02562 * 10 9 7 13 13 N 1.31622 * 120.00275 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99862 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46776 * 90.00189 * 14 12 10 16 16 H 1.48498 * 109.47052 * 209.99796 * 14 12 10 17 17 H 1.48498 * 109.47199 * 330.00106 * 14 12 10 18 18 C 1.54224 * 106.42656 * 23.64256 * 7 6 5 19 19 H 1.09000 * 110.04153 * 240.66716 * 18 7 6 20 20 C 1.53000 * 110.02331 * 119.28658 * 18 7 6 21 21 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47042 * 299.99649 * 1 2 3 23 23 H 1.08998 * 109.47431 * 59.99680 * 1 2 3 24 24 H 1.08999 * 109.47042 * 240.00351 * 2 1 3 25 25 H 1.08998 * 109.47431 * 120.00320 * 2 1 3 26 26 H 1.09000 * 110.75513 * 38.30845 * 5 3 2 27 27 H 1.09002 * 110.75596 * 274.93555 * 5 3 2 28 28 H 1.09002 * 110.48740 * 80.73781 * 6 5 3 29 29 H 1.08998 * 110.48604 * 203.24665 * 6 5 3 30 30 H 0.96998 * 119.99816 * 266.45538 * 9 7 6 31 31 H 0.97000 * 120.00350 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.46878 * 302.79052 * 20 18 7 33 33 H 1.08995 * 109.47008 * 62.79123 * 20 18 7 34 34 H 1.09001 * 109.47129 * 182.79235 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6295 1.9912 -0.8476 5 6 1.6742 2.1467 1.3302 6 6 2.7274 3.2791 1.4183 7 6 4.0211 2.6399 0.8728 8 1 4.6302 2.2683 1.6968 9 7 4.7769 3.6235 0.0933 10 6 5.6552 4.4659 0.7211 11 1 5.7911 4.4049 1.7908 12 6 6.3709 5.3982 -0.0174 13 7 7.2155 6.2076 0.5859 14 14 6.1353 5.5043 -1.8675 15 1 5.0463 6.4664 -2.1734 16 1 7.3963 5.9661 -2.5013 17 1 5.7760 4.1648 -2.3983 18 6 3.5821 1.4700 -0.0311 19 1 3.9801 0.5310 0.3536 20 6 4.0735 1.7002 -1.4616 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.7740 1.4602 2.1709 27 1 0.6663 2.5593 1.2844 28 1 2.4299 4.1258 0.7996 29 1 2.8640 3.5933 2.4530 30 1 4.6550 3.6781 -0.8674 31 1 7.7153 6.8594 0.0700 32 1 3.6907 2.6526 -1.8285 33 1 5.1633 1.7179 -1.4730 34 1 3.7165 0.8940 -2.1026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083049258.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:30 Heat of formation + Delta-G solvation = -9.184293 kcal Electronic energy + Delta-G solvation = -13119.223655 eV Core-core repulsion = 11051.475999 eV Total energy + Delta-G solvation = -2067.747656 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -38.81774 -34.54884 -32.30335 -30.92141 -30.24826 -26.41880 -24.91367 -22.68480 -22.09425 -19.78291 -18.49819 -17.69494 -15.12167 -14.89625 -14.44612 -13.98196 -13.86303 -13.09926 -12.87563 -12.60370 -12.20855 -11.88053 -11.70723 -11.49902 -11.00798 -10.95309 -10.74413 -10.33810 -10.24908 -10.15917 -10.12224 -10.04847 -9.65307 -9.45025 -8.84190 -7.17306 -5.72071 -3.05757 3.39245 3.42161 3.47304 4.63048 4.87944 4.98622 5.01676 5.32684 5.41746 5.49971 5.63056 5.66496 5.76981 5.84378 5.91661 5.96903 6.03186 6.05201 6.16094 6.20227 6.30042 6.40646 6.42790 6.53215 6.54950 6.71996 6.85734 6.88564 7.12551 8.07615 8.48347 9.28311 10.01119 10.22100 11.46813 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055786 B = 0.009633 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.793771 B = 2905.869364 C = 3164.519580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.070 0.930 5 C -0.118 4.118 6 C -0.141 4.141 7 C 0.181 3.819 8 H 0.055 0.945 9 N -0.749 5.749 10 C -0.239 4.239 11 H 0.089 0.911 12 C 0.002 3.998 13 N -0.937 5.937 14 Si 0.879 3.121 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.275 1.275 18 C -0.099 4.099 19 H 0.068 0.932 20 C -0.140 4.140 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.365 0.635 31 H 0.258 0.742 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 -11.421 -2.118 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.089 0.911 5 C -0.156 4.156 6 C -0.182 4.182 7 C 0.071 3.929 8 H 0.073 0.927 9 N -0.394 5.394 10 C -0.369 4.369 11 H 0.107 0.893 12 C -0.193 4.193 13 N -0.585 5.585 14 Si 0.709 3.291 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.201 1.201 18 C -0.118 4.118 19 H 0.086 0.914 20 C -0.198 4.198 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.201 0.799 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.629 -11.295 -1.967 16.330 hybrid contribution -0.064 0.293 -1.307 1.341 sum -11.694 -11.002 -3.274 16.386 Atomic orbital electron populations 1.21778 0.96347 1.00913 1.01784 1.21564 0.95386 0.96777 1.01549 1.22074 0.95304 0.95063 0.98221 0.91148 1.22519 0.98488 0.97879 0.96693 1.23080 0.96451 0.97638 1.00985 1.20876 0.91114 0.88121 0.92803 0.92715 1.43139 1.49430 1.40841 1.05993 1.19142 1.14093 1.09572 0.94112 0.89343 1.24653 0.99005 0.98508 0.97176 1.69700 1.30114 1.24135 1.34556 0.86641 0.77229 0.77683 0.87539 1.21179 1.21764 1.20141 1.22109 0.94246 0.99149 0.96326 0.91375 1.21766 1.01866 1.00343 0.95784 0.93353 0.92632 0.93036 0.92438 0.92131 0.92077 0.92582 0.91627 0.92581 0.79887 0.93180 0.92849 0.91912 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.76 37.16 0.36 -1.15 16 2 C -0.12 -1.32 5.29 -26.73 -0.14 -1.46 16 3 C -0.09 -1.22 2.42 -88.96 -0.22 -1.43 16 4 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 5 C -0.12 -1.66 5.51 -24.74 -0.14 -1.80 16 6 C -0.14 -2.53 6.52 -25.07 -0.16 -2.69 16 7 C 0.18 3.58 3.54 -66.63 -0.24 3.34 16 8 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 9 N -0.75 -18.06 4.41 -52.16 -0.23 -18.29 16 10 C -0.24 -6.87 10.44 -15.06 -0.16 -7.02 16 11 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 12 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 13 N -0.94 -29.90 13.97 55.49 0.78 -29.13 16 14 Si 0.88 22.46 27.74 -169.99 -4.71 17.75 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 17 H -0.28 -6.57 6.52 56.52 0.37 -6.21 16 18 C -0.10 -1.60 3.08 -89.32 -0.27 -1.88 16 19 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 20 C -0.14 -2.34 7.74 37.16 0.29 -2.05 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.06 0.80 8.02 -51.93 -0.42 0.39 16 27 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 28 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.36 8.60 2.80 -40.82 -0.11 8.49 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.05 0.95 6.78 -51.93 -0.35 0.59 16 33 H 0.06 1.15 7.87 -51.93 -0.41 0.75 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 264.53 15.07 3.99 3.99 Total: -1.00 -30.59 264.53 -6.82 -37.41 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.87 Total: 4.46 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.77 Total: -16.19 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.54 Total: -47.42 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.59 -6.82 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049258.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.227 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds