Wall clock time and date at job start Thu Apr 9 2020 14:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46663 * 2 1 4 4 H 1.08993 * 110.43922 * 303.91899 * 3 2 1 5 5 C 1.54899 * 110.48245 * 66.45645 * 3 2 1 6 6 C 1.54891 * 102.74611 * 156.62045 * 5 3 2 7 7 C 1.54266 * 104.19455 * 322.05486 * 6 5 3 8 8 H 1.09000 * 110.03049 * 142.90078 * 7 6 5 9 9 N 1.46498 * 110.03395 * 264.32648 * 7 6 5 10 10 C 1.36944 * 120.00140 * 273.54806 * 9 7 6 11 11 H 1.07994 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.38813 * 119.99959 * 179.97438 * 10 9 7 13 13 N 1.31624 * 120.00141 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99777 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46839 * 90.00660 * 14 12 10 16 16 H 1.48496 * 109.47425 * 210.00181 * 14 12 10 17 17 H 1.48495 * 109.47594 * 330.00482 * 14 12 10 18 18 C 1.53869 * 106.60029 * 23.61419 * 7 6 5 19 19 H 1.09009 * 110.03169 * 240.71589 * 18 7 6 20 20 C 1.52994 * 110.03436 * 119.28588 * 18 7 6 21 21 H 1.08994 * 109.47101 * 59.99835 * 1 2 3 22 22 H 1.09007 * 109.46354 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47322 * 299.99259 * 1 2 3 24 24 H 1.08995 * 109.47322 * 240.00741 * 2 1 3 25 25 H 1.08997 * 109.47361 * 119.99705 * 2 1 3 26 26 H 1.08997 * 110.75810 * 38.30431 * 5 3 2 27 27 H 1.08994 * 110.75501 * 274.93006 * 5 3 2 28 28 H 1.09000 * 110.48374 * 203.37774 * 6 5 3 29 29 H 1.08997 * 110.60279 * 80.78868 * 6 5 3 30 30 H 0.96999 * 120.00453 * 93.54405 * 9 7 6 31 31 H 0.96999 * 119.99477 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47467 * 61.45326 * 20 18 7 33 33 H 1.09002 * 109.47241 * 181.45752 * 20 18 7 34 34 H 1.08996 * 109.47170 * 301.45125 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6294 1.9914 -0.8475 5 6 1.6741 2.1468 1.3303 6 6 2.7272 3.2792 1.4184 7 6 4.0190 2.6378 0.8709 8 1 4.5812 3.3685 0.2894 9 7 4.8390 2.1379 1.9771 10 6 5.7200 2.9746 2.6090 11 1 5.8105 4.0028 2.2915 12 6 6.4966 2.5010 3.6575 13 7 6.3866 1.2476 4.0442 14 14 7.6988 3.6421 4.5189 15 1 7.0170 4.3132 5.6548 16 1 8.8503 2.8548 5.0282 17 1 8.1847 4.6654 3.5588 18 6 3.5820 1.4702 -0.0309 19 1 3.9801 0.5314 0.3546 20 6 4.0735 1.7003 -1.4614 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.7738 1.4602 2.1709 27 1 0.6663 2.5593 1.2845 28 1 2.8655 3.5917 2.4534 29 1 2.4310 4.1272 0.8010 30 1 4.7580 1.2143 2.2622 31 1 6.9296 0.9167 4.7767 32 1 5.1627 1.7426 -1.4691 33 1 3.7371 0.8814 -2.0973 34 1 3.6708 2.6409 -1.8370 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083049261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:37 Heat of formation + Delta-G solvation = -21.632098 kcal Electronic energy + Delta-G solvation = -13014.311743 eV Core-core repulsion = 10946.024309 eV Total energy + Delta-G solvation = -2068.287434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.59267 -34.23452 -32.34625 -30.67860 -29.88517 -26.26589 -24.78283 -22.80670 -21.94781 -19.48096 -18.95567 -16.87229 -15.10954 -14.80765 -14.30990 -13.95538 -13.44968 -13.04811 -12.84255 -12.36986 -12.18036 -11.93401 -11.51716 -11.20462 -10.98852 -10.81604 -10.62736 -10.39850 -10.14781 -10.06076 -9.95550 -9.87043 -9.67737 -9.50008 -8.80399 -6.85322 -5.70741 -2.98003 3.46621 3.51782 3.53401 4.64266 5.02361 5.12733 5.16475 5.47378 5.57066 5.61207 5.71048 5.82908 5.92591 5.94986 5.98415 6.11174 6.17906 6.20409 6.28279 6.29767 6.47780 6.49778 6.52825 6.64053 6.68583 6.83258 6.94813 7.10584 7.22113 7.76891 8.49213 9.59415 10.20847 10.54936 11.52189 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051593 B = 0.008602 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.580693 B = 3254.087617 C = 3339.606601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.086 4.086 4 H 0.066 0.934 5 C -0.112 4.112 6 C -0.147 4.147 7 C 0.178 3.822 8 H 0.046 0.954 9 N -0.721 5.721 10 C -0.235 4.235 11 H 0.069 0.931 12 C -0.016 4.016 13 N -0.934 5.934 14 Si 0.905 3.095 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 C -0.100 4.100 19 H 0.075 0.925 20 C -0.137 4.137 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.382 0.618 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -0.405 -8.742 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.085 0.915 5 C -0.149 4.149 6 C -0.188 4.188 7 C 0.068 3.932 8 H 0.064 0.936 9 N -0.362 5.362 10 C -0.366 4.366 11 H 0.087 0.913 12 C -0.212 4.212 13 N -0.583 5.583 14 Si 0.736 3.264 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.208 1.208 18 C -0.119 4.119 19 H 0.093 0.907 20 C -0.195 4.195 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.285 -0.272 -8.690 12.720 hybrid contribution 0.643 0.312 0.688 0.992 sum -8.642 0.040 -8.001 11.778 Atomic orbital electron populations 1.21772 0.96479 1.00881 1.01573 1.21570 0.95232 0.96887 1.01732 1.22061 0.95386 0.95109 0.97939 0.91527 1.22462 0.97616 0.97957 0.96902 1.23102 0.97328 0.96617 1.01726 1.20889 0.90471 0.93038 0.88805 0.93605 1.42535 1.45026 1.11864 1.36750 1.19274 1.13318 0.93348 1.10680 0.91297 1.24723 1.00604 0.96300 0.99535 1.69667 1.43888 1.13870 1.30895 0.86217 0.80806 0.79710 0.79651 1.21839 1.21861 1.20837 1.22125 0.94065 1.00280 0.95452 0.90693 1.21795 1.01106 1.00432 0.96120 0.93231 0.93382 0.92644 0.92571 0.91837 0.91661 0.93130 0.91220 0.93562 0.78358 0.93640 0.92695 0.93612 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.76 37.16 0.36 -1.35 16 2 C -0.12 -1.56 5.29 -26.73 -0.14 -1.70 16 3 C -0.09 -1.28 2.42 -88.95 -0.22 -1.50 16 4 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 5 C -0.11 -1.82 5.51 -24.73 -0.14 -1.95 16 6 C -0.15 -2.76 6.54 -25.07 -0.16 -2.92 16 7 C 0.18 3.67 3.20 -66.82 -0.21 3.46 16 8 H 0.05 0.98 7.63 -51.93 -0.40 0.58 16 9 N -0.72 -18.47 5.09 -52.35 -0.27 -18.74 16 10 C -0.23 -6.65 9.96 -15.06 -0.15 -6.80 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 13 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 14 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C -0.10 -1.72 2.84 -89.51 -0.25 -1.98 16 19 H 0.07 1.42 7.30 -51.92 -0.38 1.04 16 20 C -0.14 -2.06 8.84 37.15 0.33 -1.73 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 23 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 26 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 27 H 0.05 0.73 8.01 -51.93 -0.42 0.31 16 28 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.38 10.42 7.49 -40.82 -0.31 10.12 16 31 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 271.83 15.07 4.10 4.10 Total: -1.00 -29.55 271.83 -7.20 -36.74 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.05 Total: 5.11 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.68 Total: -17.02 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.46 Total: -46.66 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.55 -7.20 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083049261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.111 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds