Wall clock time and date at job start Thu Apr 9 2020 14:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 N 1.46499 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00045 * 275.31654 * 4 3 2 6 6 H 1.07994 * 120.00454 * 37.57493 * 5 4 3 7 7 C 1.38812 * 119.99322 * 217.57521 * 5 4 3 8 8 N 1.31617 * 120.00572 * 21.43133 * 7 5 4 9 9 Si 1.86807 * 119.99787 * 201.42786 * 7 5 4 10 10 H 1.48501 * 109.46917 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47008 * 120.00069 * 9 7 5 12 12 H 1.48499 * 109.47201 * 240.00336 * 9 7 5 13 13 C 1.46501 * 119.99799 * 95.31253 * 4 3 2 14 14 C 1.53001 * 109.47020 * 269.99809 * 13 4 3 15 15 C 1.53004 * 109.47055 * 179.97438 * 14 13 4 16 16 C 1.53002 * 117.49655 * 243.74965 * 15 14 13 17 17 C 1.52995 * 117.49737 * 175.09074 * 15 14 13 18 18 H 1.08996 * 109.47207 * 299.99804 * 1 2 3 19 19 H 1.08996 * 109.47311 * 59.99634 * 1 2 3 20 20 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47234 * 240.00476 * 2 1 3 22 22 H 1.09003 * 109.47691 * 120.00408 * 2 1 3 23 23 H 1.09005 * 109.46627 * 60.00104 * 3 2 1 24 24 H 1.08993 * 109.46776 * 300.00308 * 3 2 1 25 25 H 0.97003 * 120.00315 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.47013 * 149.99917 * 13 4 3 27 27 H 1.09000 * 109.47293 * 29.99945 * 13 4 3 28 28 H 1.09003 * 109.46850 * 60.00417 * 14 13 4 29 29 H 1.08995 * 109.47491 * 299.99804 * 14 13 4 30 30 H 1.08996 * 115.55014 * 29.41738 * 15 14 13 31 31 H 1.08994 * 117.50203 * 359.97438 * 16 15 14 32 32 H 1.09007 * 117.49585 * 145.02376 * 16 15 14 33 33 H 1.09001 * 117.49805 * 214.97771 * 17 15 14 34 34 H 1.08995 * 117.50299 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6875 1.9635 7 6 5.3612 2.0513 1.3740 8 7 5.6019 3.1240 0.6503 9 14 6.5969 1.4958 2.6602 10 1 6.0942 0.2711 3.3330 11 1 7.8961 1.2016 2.0038 12 1 6.7829 2.5727 3.6656 13 6 4.2379 1.5599 -1.2624 14 6 4.4932 0.1644 -1.8354 15 6 5.2582 0.2869 -3.1548 16 6 4.5573 -0.1983 -4.4254 17 6 5.7122 -1.0083 -3.8310 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6766 1.9563 0.8901 24 1 1.6766 1.9563 -0.8899 25 1 6.4208 3.6263 0.7850 26 1 5.1902 2.0595 -1.0848 27 1 3.6492 2.1417 -1.9716 28 1 3.5408 -0.3352 -2.0131 29 1 5.0820 -0.4175 -1.1263 30 1 5.9114 1.1552 -3.2406 31 1 3.5515 -0.6051 -4.3213 32 1 4.7498 0.3507 -5.3472 33 1 6.6640 -0.9919 -4.3620 34 1 5.4664 -1.9476 -3.3358 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083926683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:46 Heat of formation + Delta-G solvation = 22.016631 kcal Electronic energy + Delta-G solvation = -12896.403431 eV Core-core repulsion = 10830.008748 eV Total energy + Delta-G solvation = -2066.394683 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.33434 -35.81505 -32.88898 -30.97962 -28.96311 -25.47914 -23.82568 -22.03687 -21.25961 -20.01334 -19.63023 -16.59751 -15.09442 -14.85753 -14.36892 -13.95900 -13.69439 -12.89565 -12.80181 -12.47837 -11.66881 -11.52419 -11.22052 -11.09747 -10.98006 -10.69060 -10.67184 -10.53727 -10.23409 -10.05455 -9.84206 -9.65353 -9.42614 -9.11176 -8.39060 -6.47139 -5.70952 -3.29988 3.38407 3.47042 3.50032 4.24615 4.52869 5.12343 5.35300 5.39499 5.44083 5.57699 5.69616 5.81084 5.91299 6.00009 6.11118 6.23774 6.33995 6.42313 6.44179 6.51449 6.58361 6.65602 6.68869 6.93363 6.95002 7.05438 7.23460 7.33583 7.80922 7.89734 8.60084 9.28005 9.90772 10.49728 11.27844 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.013910 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.240457 B = 2012.424047 C = 2992.791889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.148 3.852 4 N -0.587 5.587 5 C -0.256 4.256 6 H 0.058 0.942 7 C 0.011 3.989 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.290 1.290 13 C 0.150 3.850 14 C -0.105 4.105 15 C -0.135 4.135 16 C -0.187 4.187 17 C -0.191 4.191 18 H 0.048 0.952 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.032 0.968 25 H 0.253 0.747 26 H 0.092 0.908 27 H 0.021 0.979 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -5.398 -5.957 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.021 3.979 4 N -0.307 5.307 5 C -0.386 4.386 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.217 1.217 13 C 0.024 3.976 14 C -0.145 4.145 15 C -0.154 4.154 16 C -0.224 4.224 17 C -0.228 4.228 18 H 0.068 0.932 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.294 -5.248 -5.933 8.578 hybrid contribution 0.746 -0.361 0.553 0.997 sum -2.547 -5.609 -5.380 8.179 Atomic orbital electron populations 1.21730 0.97519 1.00231 1.01001 1.22179 0.93572 1.01271 1.01328 1.20881 0.85728 0.92723 0.98568 1.43798 0.99218 1.85005 1.02696 1.19023 1.05492 1.19927 0.94118 0.92406 1.25166 1.00918 0.94693 0.98077 1.70019 1.25531 1.15019 1.42508 0.86380 0.81689 0.78355 0.81291 1.20113 1.21460 1.21711 1.20897 0.99396 0.91994 0.85305 1.21880 0.97588 1.02237 0.92810 1.22454 1.02038 0.97015 0.93926 1.22975 0.96979 1.04742 0.97717 1.22917 0.98307 0.96431 1.05109 0.93248 0.93487 0.93950 0.93035 0.92565 0.94048 0.94949 0.93719 0.89016 0.96066 0.93641 0.92130 0.88158 0.89326 0.89642 0.89629 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.15 0.37 -1.85 16 2 C -0.14 -2.68 6.23 -26.73 -0.17 -2.85 16 3 C 0.15 3.21 5.72 -4.04 -0.02 3.19 16 4 N -0.59 -14.87 2.43 -173.24 -0.42 -15.29 16 5 C -0.26 -7.08 9.45 -15.06 -0.14 -7.22 16 6 H 0.06 1.61 7.92 -52.49 -0.42 1.19 16 7 C 0.01 0.32 4.95 -17.43 -0.09 0.23 16 8 N -0.89 -25.85 11.47 55.49 0.64 -25.22 16 9 Si 0.89 21.79 29.60 -169.99 -5.03 16.76 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.15 3.58 5.29 -4.04 -0.02 3.56 16 14 C -0.11 -2.15 5.82 -26.73 -0.16 -2.31 16 15 C -0.14 -2.37 5.73 -90.62 -0.52 -2.88 16 16 C -0.19 -2.76 10.18 -26.69 -0.27 -3.03 16 17 C -0.19 -2.84 10.25 -26.70 -0.27 -3.11 16 18 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.97 6.64 -51.93 -0.34 0.62 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 24 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 25 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.09 2.47 5.52 -51.93 -0.29 2.18 16 27 H 0.02 0.49 7.86 -51.93 -0.41 0.08 16 28 H 0.04 0.90 6.37 -51.93 -0.33 0.56 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.79 8.08 -51.93 -0.42 1.37 16 31 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 32 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 278.15 15.07 4.19 4.19 Total: -1.00 -28.53 278.15 -7.88 -36.41 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.97 Total: -0.58 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.29 Total: -16.27 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.21 Total: -40.51 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.53 -7.88 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083926683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.428 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds