Wall clock time and date at job start Thu Apr 9 2020 14:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 N 1.46499 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00045 * 275.31654 * 4 3 2 6 6 H 1.07994 * 120.00454 * 37.57493 * 5 4 3 7 7 C 1.38812 * 119.99322 * 217.57521 * 5 4 3 8 8 N 1.31617 * 120.00572 * 21.43133 * 7 5 4 9 9 Si 1.86807 * 119.99787 * 201.42786 * 7 5 4 10 10 H 1.48501 * 109.46917 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47008 * 120.00069 * 9 7 5 12 12 H 1.48499 * 109.47201 * 240.00336 * 9 7 5 13 13 C 1.46501 * 119.99799 * 95.31253 * 4 3 2 14 14 C 1.53001 * 109.47020 * 269.99809 * 13 4 3 15 15 C 1.53004 * 109.47055 * 179.97438 * 14 13 4 16 16 C 1.53002 * 117.49655 * 243.74965 * 15 14 13 17 17 C 1.52995 * 117.49737 * 175.09074 * 15 14 13 18 18 H 1.08996 * 109.47207 * 299.99804 * 1 2 3 19 19 H 1.08996 * 109.47311 * 59.99634 * 1 2 3 20 20 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47234 * 240.00476 * 2 1 3 22 22 H 1.09003 * 109.47691 * 120.00408 * 2 1 3 23 23 H 1.09005 * 109.46627 * 60.00104 * 3 2 1 24 24 H 1.08993 * 109.46776 * 300.00308 * 3 2 1 25 25 H 0.97003 * 120.00315 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.47013 * 149.99917 * 13 4 3 27 27 H 1.09000 * 109.47293 * 29.99945 * 13 4 3 28 28 H 1.09003 * 109.46850 * 60.00417 * 14 13 4 29 29 H 1.08995 * 109.47491 * 299.99804 * 14 13 4 30 30 H 1.08996 * 115.55014 * 29.41738 * 15 14 13 31 31 H 1.08994 * 117.50203 * 359.97438 * 16 15 14 32 32 H 1.09007 * 117.49585 * 145.02376 * 16 15 14 33 33 H 1.09001 * 117.49805 * 214.97771 * 17 15 14 34 34 H 1.08995 * 117.50299 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6875 1.9635 7 6 5.3612 2.0513 1.3740 8 7 5.6019 3.1240 0.6503 9 14 6.5969 1.4958 2.6602 10 1 6.0942 0.2711 3.3330 11 1 7.8961 1.2016 2.0038 12 1 6.7829 2.5727 3.6656 13 6 4.2379 1.5599 -1.2624 14 6 4.4932 0.1644 -1.8354 15 6 5.2582 0.2869 -3.1548 16 6 4.5573 -0.1983 -4.4254 17 6 5.7122 -1.0083 -3.8310 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6766 1.9563 0.8901 24 1 1.6766 1.9563 -0.8899 25 1 6.4208 3.6263 0.7850 26 1 5.1902 2.0595 -1.0848 27 1 3.6492 2.1417 -1.9716 28 1 3.5408 -0.3352 -2.0131 29 1 5.0820 -0.4175 -1.1263 30 1 5.9114 1.1552 -3.2406 31 1 3.5515 -0.6051 -4.3213 32 1 4.7498 0.3507 -5.3472 33 1 6.6640 -0.9919 -4.3620 34 1 5.4664 -1.9476 -3.3358 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083926683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:45 Heat of formation + Delta-G solvation = 7.697859 kcal Electronic energy + Delta-G solvation = -12897.024340 eV Core-core repulsion = 10830.008748 eV Total energy + Delta-G solvation = -2067.015591 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.84459 -37.47737 -34.62520 -32.87285 -30.67698 -27.32416 -25.57508 -23.22512 -22.86102 -21.81988 -21.09338 -18.60498 -16.90790 -16.41147 -16.03093 -15.74963 -15.13896 -14.57055 -14.40552 -14.10407 -13.35182 -13.18096 -12.91961 -12.64994 -12.48449 -12.40962 -12.32922 -12.05353 -11.97437 -11.80548 -11.57113 -11.24475 -10.99519 -10.64925 -10.44535 -8.52951 -7.79832 -5.44553 1.43129 1.46214 1.56505 2.50430 2.99049 3.23662 3.64436 4.03424 4.10581 4.17287 4.25278 4.43253 4.53969 4.66174 4.73449 4.79509 4.82266 4.95332 5.00457 5.06646 5.15014 5.23826 5.26558 5.30603 5.40843 5.46288 5.51797 5.64661 5.69579 5.88232 6.48825 7.19593 7.89942 8.42579 9.14482 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.013910 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.240457 B = 2012.424047 C = 2992.791889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.144 3.856 4 N -0.606 5.606 5 C -0.264 4.264 6 H 0.051 0.949 7 C -0.037 4.037 8 N -0.919 5.919 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.154 3.846 14 C -0.086 4.086 15 C -0.167 4.167 16 C -0.168 4.168 17 C -0.177 4.177 18 H 0.052 0.948 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.027 0.973 24 H 0.042 0.958 25 H 0.251 0.749 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -6.720 -6.851 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.018 3.982 4 N -0.327 5.327 5 C -0.395 4.395 6 H 0.069 0.931 7 C -0.234 4.234 8 N -0.563 5.563 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.028 3.972 14 C -0.126 4.126 15 C -0.186 4.186 16 C -0.205 4.205 17 C -0.214 4.214 18 H 0.071 0.929 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.895 -6.586 -6.834 10.259 hybrid contribution 0.873 0.076 0.807 1.191 sum -3.022 -6.510 -6.027 9.372 Atomic orbital electron populations 1.21661 0.94330 1.01892 1.01820 1.21978 0.96247 0.98428 1.00441 1.21015 0.83945 0.94868 0.98322 1.44063 1.00713 1.85362 1.02519 1.19201 1.06076 1.19407 0.94794 0.93089 1.25850 1.02484 0.94786 1.00255 1.70140 1.25864 1.16074 1.44217 0.85420 0.79281 0.78022 0.79013 1.19312 1.21449 1.21582 1.20794 0.97618 0.93809 0.85018 1.21544 0.97920 0.99341 0.93749 1.22266 1.03779 0.98680 0.93900 1.23072 0.97242 1.03538 0.96612 1.23013 0.99420 0.95027 1.03902 0.92927 0.92224 0.91867 0.93032 0.94303 0.95405 0.94000 0.93958 0.92316 0.95946 0.92846 0.94667 0.89247 0.88673 0.87663 0.87801 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.76 6.23 30.59 0.19 -4.57 16 3 C 0.14 6.26 5.72 86.38 0.49 6.76 16 4 N -0.61 -31.17 2.43 -702.00 -1.71 -32.88 16 5 C -0.26 -14.90 9.45 84.03 0.79 -14.10 16 6 H 0.05 2.89 7.92 -2.91 -0.02 2.87 16 7 C -0.04 -2.08 4.95 84.86 0.42 -1.66 16 8 N -0.92 -54.82 11.47 21.65 0.25 -54.57 16 9 Si 0.95 45.46 29.60 68.60 2.03 47.49 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 C 0.15 7.46 5.29 86.38 0.46 7.92 16 14 C -0.09 -3.51 5.82 30.60 0.18 -3.33 16 15 C -0.17 -5.69 5.73 -10.79 -0.06 -5.75 16 16 C -0.17 -4.47 10.18 30.62 0.31 -4.16 16 17 C -0.18 -4.82 10.25 30.62 0.31 -4.50 16 18 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 19 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.05 1.86 6.64 -2.38 -0.02 1.84 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.03 1.26 8.08 -2.38 -0.02 1.24 16 24 H 0.04 1.71 7.83 -2.39 -0.02 1.69 16 25 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.06 3.28 5.52 -2.39 -0.01 3.27 16 27 H 0.02 1.05 7.86 -2.39 -0.02 1.03 16 28 H 0.05 2.06 6.37 -2.39 -0.02 2.04 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 3.21 8.08 -2.39 -0.02 3.20 16 31 H 0.09 2.43 8.03 -2.39 -0.02 2.41 16 32 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -61.43 278.15 5.41 -56.02 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.03 Total: 10.47 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.81 Total: -26.53 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -1.46 Total: -87.45 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -61.43 5.41 -56.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083926683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.716 kcal (2) G-P(sol) polarization free energy of solvation -61.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds