Wall clock time and date at job start Thu Apr 9 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.59077 * 2 1 4 4 C 1.54930 * 110.81104 * 123.10655 * 2 1 3 5 5 C 1.54594 * 102.92398 * 155.91966 * 4 2 1 6 6 H 1.08994 * 110.39509 * 96.99834 * 5 4 2 7 7 C 1.50706 * 110.30953 * 219.12811 * 5 4 2 8 8 H 1.08005 * 120.00138 * 115.71341 * 7 5 4 9 9 C 1.37871 * 119.99722 * 295.71221 * 7 5 4 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00073 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 119.99815 * 11 9 7 14 14 H 1.48498 * 109.47295 * 240.00422 * 11 9 7 15 15 C 1.53996 * 105.13788 * 338.03834 * 5 4 2 16 16 C 1.53001 * 109.91692 * 118.12706 * 15 5 4 17 17 C 1.52998 * 109.92035 * 239.22631 * 15 5 4 18 18 N 1.47900 * 107.05914 * 358.77705 * 15 5 4 19 19 C 1.46900 * 111.00295 * 145.83947 * 18 15 5 20 20 H 1.08997 * 109.46569 * 183.00065 * 1 2 3 21 21 H 1.08989 * 109.47086 * 303.00094 * 1 2 3 22 22 H 1.08997 * 109.46805 * 63.00803 * 1 2 3 23 23 H 1.09006 * 110.72522 * 37.55997 * 4 2 1 24 24 H 1.09007 * 110.72489 * 274.27496 * 4 2 1 25 25 H 0.97000 * 119.99651 * 0.02562 * 10 9 7 26 26 H 1.09006 * 109.46857 * 60.00275 * 16 15 5 27 27 H 1.08998 * 109.47496 * 179.97438 * 16 15 5 28 28 H 1.08999 * 109.46986 * 300.00591 * 16 15 5 29 29 H 1.09000 * 109.47171 * 60.00135 * 17 15 5 30 30 H 1.09005 * 109.46939 * 180.02562 * 17 15 5 31 31 H 1.08996 * 109.47066 * 300.00077 * 17 15 5 32 32 H 1.08998 * 109.47066 * 59.99935 * 19 18 15 33 33 H 1.08996 * 109.47638 * 180.02562 * 19 18 15 34 34 H 1.09006 * 109.46995 * 300.00502 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0805 -0.7910 1.2131 5 6 3.4893 -1.2156 0.7386 6 1 4.2415 -0.5215 1.1133 7 6 3.7962 -2.6172 1.1997 8 1 3.9379 -3.4052 0.4748 9 6 3.8960 -2.8934 2.5467 10 7 3.7230 -1.9339 3.4294 11 14 4.2757 -4.6308 3.1183 12 1 4.4241 -5.5190 1.9374 13 1 5.5392 -4.6303 3.8985 14 1 3.1662 -5.1243 3.9731 15 6 3.4294 -1.1599 -0.7991 16 6 4.4315 -0.1290 -1.3228 17 6 3.7463 -2.5380 -1.3834 18 7 2.0543 -0.7570 -1.1655 19 6 2.0543 0.0746 -2.3765 20 1 -0.3632 -1.0263 0.0538 21 1 -0.3633 0.5597 0.8618 22 1 -0.3633 0.4664 -0.9157 23 1 1.4621 -1.6654 1.4162 24 1 2.1465 -0.1511 2.0931 25 1 3.5247 -1.0320 3.1326 26 1 5.4378 -0.4103 -1.0123 27 1 4.3835 -0.0959 -2.4112 28 1 4.1875 0.8531 -0.9178 29 1 3.0169 -3.2626 -1.0215 30 1 3.7024 -2.4901 -2.4715 31 1 4.7459 -2.8428 -1.0735 32 1 2.4857 -0.4887 -3.2040 33 1 1.0310 0.3572 -2.6233 34 1 2.6465 0.9726 -2.2005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107222353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:54 Heat of formation + Delta-G solvation = -1.620002 kcal Electronic energy + Delta-G solvation = -13698.992344 eV Core-core repulsion = 11631.572700 eV Total energy + Delta-G solvation = -2067.419644 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -39.23457 -33.63791 -32.77372 -30.51306 -27.70602 -26.91000 -25.20681 -23.82634 -21.96180 -19.60966 -18.20675 -16.23170 -15.38691 -14.72869 -13.94226 -13.62143 -13.30169 -13.03750 -12.90404 -12.16438 -11.92532 -11.64727 -11.25834 -11.20798 -11.00333 -10.71360 -10.61868 -10.34890 -10.19000 -10.06988 -9.98376 -9.71275 -9.23237 -8.28155 -8.22352 -7.70196 -6.22508 -3.94499 3.48115 3.51436 3.64528 4.59269 4.61513 5.40737 5.49977 5.57061 5.73562 5.76340 5.82673 5.91463 5.98063 6.00978 6.14892 6.25396 6.27542 6.45180 6.47313 6.52879 6.63986 6.70987 6.78106 7.00696 7.13120 7.24713 7.37660 7.43743 7.84866 7.93463 8.34334 8.56034 8.99418 9.76269 11.13671 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041370 B = 0.013073 C = 0.011412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.662956 B = 2141.377752 C = 2452.984675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 H 0.036 0.964 4 C -0.104 4.104 5 C 0.036 3.964 6 H 0.020 0.980 7 C -0.592 4.592 8 H 0.068 0.932 9 C 0.016 3.984 10 N -0.919 5.919 11 Si 1.069 2.931 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.097 3.903 16 C -0.161 4.161 17 C -0.103 4.103 18 N -0.507 5.507 19 C 0.016 3.984 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.270 0.730 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 3.042 -7.995 8.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.054 4.054 3 H 0.054 0.946 4 C -0.143 4.143 5 C 0.017 3.983 6 H 0.038 0.962 7 C -0.630 4.630 8 H 0.086 0.914 9 C -0.187 4.187 10 N -0.556 5.556 11 Si 0.899 3.101 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.216 1.216 15 C 0.008 3.992 16 C -0.220 4.220 17 C -0.160 4.160 18 N -0.231 5.231 19 C -0.133 4.133 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.589 1.648 -6.774 7.437 hybrid contribution 0.259 1.850 -1.234 2.239 sum -2.331 3.498 -8.008 9.044 Atomic orbital electron populations 1.21634 0.95094 1.01983 1.00002 1.22811 0.94774 0.95110 0.92661 0.94629 1.22737 0.99311 0.98248 0.93968 1.19681 0.92322 0.97918 0.88377 0.96237 1.22380 1.51905 0.94239 0.94452 0.91372 1.25741 0.94485 1.05115 0.93372 1.70725 1.45301 1.02686 1.36884 0.83533 0.76652 0.74683 0.75245 1.21527 1.21648 1.21565 1.21785 0.85426 0.94081 0.97919 1.22404 1.00671 0.99170 0.99742 1.21637 1.01656 0.96553 0.96177 1.64752 1.19934 1.36176 1.02226 1.22491 1.00345 0.96010 0.94407 0.92045 0.93030 0.93851 0.91315 0.93261 0.91821 0.92370 0.93445 0.93782 0.91528 0.96122 0.92334 0.92150 0.92611 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.51 37.16 0.35 -1.81 16 2 C 0.05 1.07 2.90 -65.78 -0.19 0.88 16 3 H 0.04 0.69 7.96 -51.93 -0.41 0.27 16 4 C -0.10 -2.43 5.01 -24.87 -0.12 -2.55 16 5 C 0.04 0.89 2.18 -90.41 -0.20 0.70 16 6 H 0.02 0.53 7.49 -51.93 -0.39 0.14 16 7 C -0.59 -16.11 7.51 -34.44 -0.26 -16.36 16 8 H 0.07 1.83 4.70 -52.48 -0.25 1.58 16 9 C 0.02 0.46 5.34 -17.82 -0.10 0.37 16 10 N -0.92 -27.46 13.45 55.43 0.75 -26.71 16 11 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.10 2.04 0.89 -130.53 -0.12 1.92 16 16 C -0.16 -2.99 6.97 37.16 0.26 -2.73 16 17 C -0.10 -2.13 7.33 37.16 0.27 -1.85 16 18 N -0.51 -9.94 4.88 -215.38 -1.05 -10.99 16 19 C 0.02 0.27 8.22 60.06 0.49 0.76 16 20 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 21 H 0.05 0.79 8.14 -51.94 -0.42 0.37 16 22 H 0.04 0.64 7.45 -51.93 -0.39 0.26 16 23 H 0.07 1.75 7.75 -51.93 -0.40 1.34 16 24 H 0.05 1.17 7.10 -51.92 -0.37 0.80 16 25 H 0.27 8.00 5.65 -40.82 -0.23 7.77 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.77 6.69 -51.93 -0.35 0.43 16 28 H 0.04 0.80 7.59 -51.93 -0.39 0.41 16 29 H 0.07 1.49 7.00 -51.93 -0.36 1.12 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.23 7.22 -51.93 -0.38 0.86 16 32 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.06 0.81 7.43 -51.93 -0.39 0.43 16 34 H 0.02 0.38 6.27 -51.93 -0.33 0.05 16 LS Contribution 255.99 15.07 3.86 3.86 Total: -1.00 -28.91 255.99 -6.65 -35.56 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.52 Total: -1.25 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 0.40 Total: -20.69 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.30 Total: -37.70 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.91 -6.65 -35.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107222353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.935 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds