Wall clock time and date at job start Thu Apr 9 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.59077 * 2 1 4 4 C 1.54930 * 110.81104 * 123.10655 * 2 1 3 5 5 C 1.54594 * 102.92398 * 155.91966 * 4 2 1 6 6 H 1.08994 * 110.39509 * 96.99834 * 5 4 2 7 7 C 1.50706 * 110.30953 * 219.12811 * 5 4 2 8 8 H 1.08005 * 120.00138 * 115.71341 * 7 5 4 9 9 C 1.37871 * 119.99722 * 295.71221 * 7 5 4 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00073 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 119.99815 * 11 9 7 14 14 H 1.48498 * 109.47295 * 240.00422 * 11 9 7 15 15 C 1.53996 * 105.13788 * 338.03834 * 5 4 2 16 16 C 1.53001 * 109.91692 * 118.12706 * 15 5 4 17 17 C 1.52998 * 109.92035 * 239.22631 * 15 5 4 18 18 N 1.47900 * 107.05914 * 358.77705 * 15 5 4 19 19 C 1.46900 * 111.00295 * 145.83947 * 18 15 5 20 20 H 1.08997 * 109.46569 * 183.00065 * 1 2 3 21 21 H 1.08989 * 109.47086 * 303.00094 * 1 2 3 22 22 H 1.08997 * 109.46805 * 63.00803 * 1 2 3 23 23 H 1.09006 * 110.72522 * 37.55997 * 4 2 1 24 24 H 1.09007 * 110.72489 * 274.27496 * 4 2 1 25 25 H 0.97000 * 119.99651 * 0.02562 * 10 9 7 26 26 H 1.09006 * 109.46857 * 60.00275 * 16 15 5 27 27 H 1.08998 * 109.47496 * 179.97438 * 16 15 5 28 28 H 1.08999 * 109.46986 * 300.00591 * 16 15 5 29 29 H 1.09000 * 109.47171 * 60.00135 * 17 15 5 30 30 H 1.09005 * 109.46939 * 180.02562 * 17 15 5 31 31 H 1.08996 * 109.47066 * 300.00077 * 17 15 5 32 32 H 1.08998 * 109.47066 * 59.99935 * 19 18 15 33 33 H 1.08996 * 109.47638 * 180.02562 * 19 18 15 34 34 H 1.09006 * 109.46995 * 300.00502 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0805 -0.7910 1.2131 5 6 3.4893 -1.2156 0.7386 6 1 4.2415 -0.5215 1.1133 7 6 3.7962 -2.6172 1.1997 8 1 3.9379 -3.4052 0.4748 9 6 3.8960 -2.8934 2.5467 10 7 3.7230 -1.9339 3.4294 11 14 4.2757 -4.6308 3.1183 12 1 4.4241 -5.5190 1.9374 13 1 5.5392 -4.6303 3.8985 14 1 3.1662 -5.1243 3.9731 15 6 3.4294 -1.1599 -0.7991 16 6 4.4315 -0.1290 -1.3228 17 6 3.7463 -2.5380 -1.3834 18 7 2.0543 -0.7570 -1.1655 19 6 2.0543 0.0746 -2.3765 20 1 -0.3632 -1.0263 0.0538 21 1 -0.3633 0.5597 0.8618 22 1 -0.3633 0.4664 -0.9157 23 1 1.4621 -1.6654 1.4162 24 1 2.1465 -0.1511 2.0931 25 1 3.5247 -1.0320 3.1326 26 1 5.4378 -0.4103 -1.0123 27 1 4.3835 -0.0959 -2.4112 28 1 4.1875 0.8531 -0.9178 29 1 3.0169 -3.2626 -1.0215 30 1 3.7024 -2.4901 -2.4715 31 1 4.7459 -2.8428 -1.0735 32 1 2.4857 -0.4887 -3.2040 33 1 1.0310 0.3572 -2.6233 34 1 2.6465 0.9726 -2.2005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107222353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:54 Heat of formation + Delta-G solvation = -19.820312 kcal Electronic energy + Delta-G solvation = -13699.781569 eV Core-core repulsion = 11631.572700 eV Total energy + Delta-G solvation = -2068.208869 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88695 -35.58385 -34.38411 -32.30240 -29.27016 -28.53245 -26.96351 -25.53394 -23.76699 -21.31616 -19.95176 -18.19898 -17.06765 -16.27326 -15.79601 -15.20844 -15.11455 -14.71529 -14.36236 -13.74449 -13.39514 -13.26399 -12.83175 -12.77565 -12.62521 -12.54766 -12.36991 -12.08428 -11.90260 -11.80480 -11.59820 -11.54697 -11.03151 -10.42182 -10.25039 -9.21171 -8.46612 -6.18283 1.54396 1.62921 1.78412 2.62000 3.10002 3.29658 3.87179 4.04105 4.18519 4.22058 4.41320 4.44054 4.50306 4.64056 4.70215 4.76882 4.85786 4.92342 4.98098 4.99534 5.02060 5.09070 5.16980 5.27117 5.40250 5.42694 5.55210 5.64378 6.19279 6.24976 6.32942 6.42233 6.79088 7.60288 8.90013 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041370 B = 0.013073 C = 0.011412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.662956 B = 2141.377752 C = 2452.984675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.062 3.938 3 H 0.042 0.958 4 C -0.098 4.098 5 C 0.025 3.975 6 H -0.011 1.011 7 C -0.596 4.596 8 H 0.071 0.929 9 C -0.037 4.037 10 N -0.948 5.948 11 Si 1.112 2.888 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.095 3.905 16 C -0.154 4.154 17 C -0.096 4.096 18 N -0.517 5.517 19 C 0.015 3.985 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 3.137 -9.993 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.046 4.046 3 H 0.060 0.940 4 C -0.137 4.137 5 C 0.006 3.994 6 H 0.007 0.993 7 C -0.634 4.634 8 H 0.089 0.911 9 C -0.234 4.234 10 N -0.587 5.587 11 Si 0.936 3.064 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.212 1.212 15 C 0.006 3.994 16 C -0.212 4.212 17 C -0.153 4.153 18 N -0.241 5.241 19 C -0.133 4.133 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.071 1.753 -8.800 9.484 hybrid contribution 0.408 1.852 -0.646 2.004 sum -2.662 3.605 -9.446 10.455 Atomic orbital electron populations 1.21580 0.92671 1.01806 1.01945 1.22756 0.96641 0.94505 0.90719 0.93967 1.22503 0.98419 0.97395 0.95341 1.19698 0.92084 0.95917 0.91685 0.99290 1.22781 1.50462 0.95597 0.94552 0.91127 1.27076 0.94220 1.07903 0.94181 1.70837 1.47761 1.02686 1.37419 0.82977 0.76643 0.71106 0.75660 1.19443 1.21097 1.21222 1.21698 0.87379 0.95311 0.95054 1.22311 0.99262 0.98164 1.01481 1.21512 1.00207 0.95669 0.97952 1.64750 1.18662 1.37437 1.03285 1.22602 1.02043 0.95876 0.92829 0.93198 0.91946 0.91135 0.94144 0.95052 0.93079 0.93249 0.90469 0.93780 0.93777 0.93126 0.93418 0.90843 0.90589 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 9.51 71.98 0.68 -3.14 16 2 C 0.06 2.34 2.90 45.26 0.13 2.47 16 3 H 0.04 1.55 7.96 -2.39 -0.02 1.53 16 4 C -0.10 -4.69 5.01 31.80 0.16 -4.53 16 5 C 0.03 1.27 2.18 -10.66 -0.02 1.25 16 6 H -0.01 -0.61 7.49 -2.39 -0.02 -0.63 16 7 C -0.60 -33.07 7.51 25.60 0.19 -32.88 16 8 H 0.07 3.82 4.70 -2.91 -0.01 3.80 16 9 C -0.04 -2.10 5.34 84.65 0.45 -1.65 16 10 N -0.95 -58.49 13.45 21.45 0.29 -58.21 16 11 Si 1.11 51.33 29.90 68.60 2.05 53.39 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 15 C 0.09 3.88 0.89 3.67 0.00 3.88 16 16 C -0.15 -5.39 6.97 71.98 0.50 -4.88 16 17 C -0.10 -3.83 7.33 71.98 0.53 -3.30 16 18 N -0.52 -19.10 4.88 -835.32 -4.07 -23.17 16 19 C 0.01 0.41 8.22 127.69 1.05 1.46 16 20 H 0.05 1.67 8.11 -2.39 -0.02 1.65 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.07 1.83 7.45 -2.39 -0.02 1.81 16 23 H 0.04 2.12 7.75 -2.38 -0.02 2.10 16 24 H 0.03 1.56 7.10 -2.38 -0.02 1.54 16 25 H 0.26 16.06 5.65 -92.71 -0.52 15.54 16 26 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.08 2.23 6.69 -2.39 -0.02 2.22 16 28 H 0.04 1.52 7.59 -2.39 -0.02 1.50 16 29 H 0.04 1.93 7.00 -2.39 -0.02 1.91 16 30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.05 1.97 7.22 -2.39 -0.02 1.95 16 32 H 0.07 1.90 7.75 -2.39 -0.02 1.88 16 33 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16 34 H 0.03 0.85 6.27 -2.38 -0.01 0.84 16 Total: -1.00 -62.99 255.99 3.24 -59.75 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.30 Total: 9.55 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.68 Total: -41.31 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.78 Total: -81.38 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.39 kcal Total: -62.99 3.24 -59.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107222353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.929 kcal (2) G-P(sol) polarization free energy of solvation -62.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds