Wall clock time and date at job start Thu Apr 9 2020 14:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 N 1.46891 * 109.47357 * 120.00271 * 2 1 3 5 5 C 1.47845 * 110.99951 * 54.15674 * 4 2 1 6 6 C 1.54914 * 104.79525 * 146.36750 * 5 4 2 7 7 C 1.55143 * 101.64981 * 322.92854 * 6 5 4 8 8 H 1.09008 * 110.85613 * 277.20254 * 7 6 5 9 9 C 1.53002 * 110.70611 * 154.04048 * 7 6 5 10 10 C 1.50706 * 109.46931 * 71.39521 * 9 7 6 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00420 * 14 12 10 18 18 C 1.47449 * 111.00268 * 175.00181 * 4 2 1 19 19 H 1.09007 * 109.47125 * 299.99818 * 1 2 3 20 20 H 1.08997 * 109.47411 * 59.99622 * 1 2 3 21 21 H 1.09001 * 109.46896 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47081 * 240.00653 * 2 1 3 23 23 H 1.09005 * 109.46847 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47387 * 300.00393 * 3 2 1 25 25 H 1.08994 * 109.47042 * 60.00455 * 3 2 1 26 26 H 1.09003 * 110.37390 * 265.19200 * 5 4 2 27 27 H 1.08995 * 110.37424 * 27.42287 * 5 4 2 28 28 H 1.09005 * 110.98684 * 204.84359 * 6 5 4 29 29 H 1.09000 * 110.99282 * 81.02043 * 6 5 4 30 30 H 1.09000 * 109.46986 * 311.40079 * 9 7 6 31 31 H 1.08992 * 109.46974 * 191.40143 * 9 7 6 32 32 H 0.97000 * 119.99706 * 359.97438 * 13 12 10 33 33 H 1.08994 * 109.89315 * 117.33625 * 18 4 2 34 34 H 1.08994 * 110.02178 * 356.22152 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4343 -2.0459 1.3057 6 6 2.5465 -2.9082 1.9533 7 6 3.8224 -2.3186 1.2964 8 1 3.9903 -2.7570 0.3126 9 6 5.0415 -2.5308 2.1963 10 6 5.4169 -3.9904 2.1976 11 1 4.8436 -4.6960 1.6146 12 6 6.4923 -4.4248 2.9431 13 7 7.1901 -3.5656 3.6534 14 14 6.9581 -6.2338 2.9441 15 1 8.1406 -6.4399 3.8186 16 1 5.8191 -7.0380 3.4551 17 1 7.2848 -6.6617 1.5601 18 6 3.4887 -0.8169 1.1749 19 1 -0.3634 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 0.5494 -2.0277 1.9420 27 1 1.1820 -2.4291 0.3170 28 1 2.4250 -3.9602 1.6952 29 1 2.5658 -2.7727 3.0347 30 1 4.8024 -2.2163 3.2122 31 1 5.8774 -1.9409 1.8206 32 1 6.9484 -2.6262 3.6525 33 1 3.9210 -0.2719 2.0140 34 1 3.8809 -0.4247 0.2367 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:45 Heat of formation + Delta-G solvation = -22.170972 kcal Electronic energy + Delta-G solvation = -12885.377974 eV Core-core repulsion = 10817.067173 eV Total energy + Delta-G solvation = -2068.310801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.01033 -34.91176 -32.90292 -30.02194 -28.98626 -26.94486 -25.57863 -22.56975 -21.65209 -19.86420 -19.21662 -16.81440 -15.97304 -15.15766 -14.12774 -13.75520 -13.55597 -13.16415 -13.06242 -12.34696 -12.16719 -12.06529 -11.92959 -11.61087 -11.01594 -10.93842 -10.77621 -10.69137 -10.56745 -10.31035 -10.07381 -9.76273 -9.48162 -8.49419 -8.28744 -7.95328 -6.31826 -4.00375 3.45322 3.47335 3.66034 4.23729 4.57376 5.00237 5.05154 5.25682 5.41322 5.44506 5.47819 5.61234 5.66213 5.72344 5.84131 5.87970 5.94336 6.03367 6.16635 6.25840 6.30354 6.38594 6.52142 6.73938 6.82759 7.01956 7.30631 7.41050 7.46193 7.60961 8.26397 8.50321 8.92971 9.71427 11.08656 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.072255 B = 0.007450 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.421767 B = 3757.509064 C = 3993.922971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.143 4.143 4 N -0.527 5.527 5 C 0.041 3.959 6 C -0.110 4.110 7 C -0.092 4.092 8 H 0.060 0.940 9 C 0.020 3.980 10 C -0.597 4.597 11 H 0.047 0.953 12 C 0.013 3.987 13 N -0.914 5.914 14 Si 1.067 2.933 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.043 3.957 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.036 0.964 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.011 0.989 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.073 0.927 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 5.676 -6.611 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.200 4.200 4 N -0.252 5.252 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.112 4.112 8 H 0.078 0.922 9 C -0.017 4.017 10 C -0.635 4.635 11 H 0.065 0.935 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.896 3.104 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.216 1.216 18 C -0.084 4.084 19 H 0.081 0.919 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.295 4.901 -5.575 12.692 hybrid contribution -0.853 0.632 -1.424 1.776 sum -11.149 5.533 -6.998 14.279 Atomic orbital electron populations 1.21880 0.94768 1.01854 1.01737 1.21767 0.95292 0.95303 0.91564 1.21843 1.01258 0.95373 1.01560 1.63679 1.06749 1.17783 1.36987 1.23060 0.98278 0.88312 0.98974 1.22614 0.93329 0.98383 1.00492 1.22314 0.96889 0.92326 0.99640 0.92182 1.19195 0.91373 0.97411 0.93728 1.22026 1.16460 0.93239 1.31777 0.93473 1.25825 0.93567 1.06309 0.93324 1.70778 1.40487 1.04553 1.39281 0.83566 0.76291 0.74352 0.76192 1.20797 1.21500 1.21560 1.22981 0.86816 0.98084 1.00518 0.91944 0.92679 0.92678 0.94599 0.92573 0.92750 0.91962 0.91113 0.94349 0.91370 0.91011 0.97123 0.97620 0.92118 0.90825 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.97 37.16 0.33 -1.33 16 2 C 0.07 0.95 2.24 -67.72 -0.15 0.80 16 3 C -0.14 -1.75 9.15 37.16 0.34 -1.41 16 4 N -0.53 -8.64 5.03 -223.30 -1.12 -9.77 16 5 C 0.04 0.66 5.33 -2.29 -0.01 0.65 16 6 C -0.11 -2.12 6.23 -24.59 -0.15 -2.28 16 7 C -0.09 -1.96 2.87 -88.80 -0.25 -2.21 16 8 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 9 C 0.02 0.52 3.64 -27.88 -0.10 0.42 16 10 C -0.60 -17.11 8.81 -34.44 -0.30 -17.41 16 11 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 12 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 13 N -0.91 -28.44 13.65 55.43 0.76 -27.68 16 14 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.04 0.80 5.76 -2.83 -0.02 0.78 16 19 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.63 6.74 -51.93 -0.35 0.28 16 22 H 0.04 0.52 8.10 -51.93 -0.42 0.09 16 23 H 0.06 0.72 6.82 -51.93 -0.35 0.37 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.58 7.32 -51.93 -0.38 0.20 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.47 7.94 -51.93 -0.41 1.05 16 30 H 0.01 0.29 7.86 -51.93 -0.41 -0.12 16 31 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 32 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 33 H 0.07 1.42 7.82 -51.93 -0.41 1.01 16 34 H 0.05 0.79 6.67 -51.93 -0.35 0.44 16 LS Contribution 267.60 15.07 4.03 4.03 Total: -1.00 -30.29 267.60 -7.78 -38.07 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.95 Total: -3.51 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -0.42 Total: -21.70 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.37 Total: -37.45 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.29 -7.78 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.903 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds