Wall clock time and date at job start Thu Apr 9 2020 14:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 N 1.46891 * 109.47357 * 120.00271 * 2 1 3 5 5 C 1.47845 * 110.99951 * 54.15674 * 4 2 1 6 6 C 1.54914 * 104.79525 * 146.36750 * 5 4 2 7 7 C 1.55143 * 101.64981 * 322.92854 * 6 5 4 8 8 H 1.09008 * 110.85613 * 277.20254 * 7 6 5 9 9 C 1.53002 * 110.70611 * 154.04048 * 7 6 5 10 10 C 1.50706 * 109.46931 * 71.39521 * 9 7 6 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 7 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00420 * 14 12 10 18 18 C 1.47449 * 111.00268 * 175.00181 * 4 2 1 19 19 H 1.09007 * 109.47125 * 299.99818 * 1 2 3 20 20 H 1.08997 * 109.47411 * 59.99622 * 1 2 3 21 21 H 1.09001 * 109.46896 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47081 * 240.00653 * 2 1 3 23 23 H 1.09005 * 109.46847 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47387 * 300.00393 * 3 2 1 25 25 H 1.08994 * 109.47042 * 60.00455 * 3 2 1 26 26 H 1.09003 * 110.37390 * 265.19200 * 5 4 2 27 27 H 1.08995 * 110.37424 * 27.42287 * 5 4 2 28 28 H 1.09005 * 110.98684 * 204.84359 * 6 5 4 29 29 H 1.09000 * 110.99282 * 81.02043 * 6 5 4 30 30 H 1.09000 * 109.46986 * 311.40079 * 9 7 6 31 31 H 1.08992 * 109.46974 * 191.40143 * 9 7 6 32 32 H 0.97000 * 119.99706 * 359.97438 * 13 12 10 33 33 H 1.08994 * 109.89315 * 117.33625 * 18 4 2 34 34 H 1.08994 * 110.02178 * 356.22152 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4343 -2.0459 1.3057 6 6 2.5465 -2.9082 1.9533 7 6 3.8224 -2.3186 1.2964 8 1 3.9903 -2.7570 0.3126 9 6 5.0415 -2.5308 2.1963 10 6 5.4169 -3.9904 2.1976 11 1 4.8436 -4.6960 1.6146 12 6 6.4923 -4.4248 2.9431 13 7 7.1901 -3.5656 3.6534 14 14 6.9581 -6.2338 2.9441 15 1 8.1406 -6.4399 3.8186 16 1 5.8191 -7.0380 3.4551 17 1 7.2848 -6.6617 1.5601 18 6 3.4887 -0.8169 1.1749 19 1 -0.3634 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 0.5494 -2.0277 1.9420 27 1 1.1820 -2.4291 0.3170 28 1 2.4250 -3.9602 1.6952 29 1 2.5658 -2.7727 3.0347 30 1 4.8024 -2.2163 3.2122 31 1 5.8774 -1.9409 1.8206 32 1 6.9484 -2.6262 3.6525 33 1 3.9210 -0.2719 2.0140 34 1 3.8809 -0.4247 0.2367 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:45 Heat of formation + Delta-G solvation = -41.256355 kcal Electronic energy + Delta-G solvation = -12886.205579 eV Core-core repulsion = 10817.067173 eV Total energy + Delta-G solvation = -2069.138405 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.40395 -36.52547 -34.78159 -31.69728 -30.31128 -28.22096 -27.27959 -24.61753 -22.97022 -21.31869 -20.67777 -18.97549 -17.26022 -16.53140 -15.67155 -15.38502 -15.32933 -14.81078 -14.32894 -14.03788 -13.53019 -13.47790 -13.19411 -12.94861 -12.75596 -12.48178 -12.16632 -12.00595 -11.93400 -11.88496 -11.73281 -11.49674 -11.36301 -10.62899 -10.53605 -9.27289 -8.67819 -6.38006 1.51415 1.60174 1.79325 2.56689 2.98412 3.16274 3.73718 3.81044 3.97612 4.11389 4.17108 4.34000 4.42845 4.52981 4.57588 4.79544 4.81526 4.87998 4.90963 4.94975 4.99673 5.05868 5.12938 5.21231 5.30559 5.34261 5.37393 5.53531 5.96847 6.02793 6.18208 6.23773 6.58097 7.43808 8.72409 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.072255 B = 0.007450 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.421767 B = 3757.509064 C = 3993.922971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.063 3.937 3 C -0.140 4.140 4 N -0.533 5.533 5 C 0.052 3.948 6 C -0.109 4.109 7 C -0.092 4.092 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.609 4.609 11 H 0.050 0.950 12 C -0.042 4.042 13 N -0.940 5.940 14 Si 1.117 2.883 15 H -0.284 1.284 16 H -0.268 1.268 17 H -0.269 1.269 18 C 0.054 3.946 19 H 0.061 0.939 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.053 0.947 30 H -0.012 1.012 31 H -0.017 1.017 32 H 0.254 0.746 33 H 0.057 0.943 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 5.232 -7.838 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.198 4.198 4 N -0.258 5.258 5 C -0.075 4.075 6 C -0.147 4.147 7 C -0.111 4.111 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.647 4.647 11 H 0.069 0.931 12 C -0.239 4.239 13 N -0.578 5.578 14 Si 0.938 3.062 15 H -0.209 1.209 16 H -0.193 1.193 17 H -0.194 1.194 18 C -0.073 4.073 19 H 0.080 0.920 20 H 0.095 0.905 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.006 0.994 31 H 0.002 0.998 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.970 4.478 -6.819 14.485 hybrid contribution -0.352 0.823 -1.053 1.382 sum -12.322 5.301 -7.872 15.553 Atomic orbital electron populations 1.21848 0.92667 1.02340 1.02829 1.21952 0.96972 0.95540 0.90041 1.21835 1.00479 0.94759 1.02698 1.63708 1.05052 1.18104 1.38943 1.23012 0.97388 0.87330 0.99754 1.22553 0.93676 0.99044 0.99465 1.22187 0.95748 0.94901 0.98279 0.92581 1.19087 0.92826 0.95916 0.93431 1.22421 1.16399 0.94501 1.31366 0.93130 1.27454 0.93627 1.10274 0.92522 1.70918 1.41632 1.04155 1.41047 0.82937 0.76585 0.69346 0.77293 1.20941 1.19340 1.19427 1.22749 0.88628 0.95584 1.00380 0.91998 0.90490 0.92494 0.94861 0.93804 0.90324 0.92127 0.89226 0.92811 0.91406 0.92823 0.99415 0.99838 0.93689 0.92459 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.97 71.98 0.65 -2.07 16 2 C 0.06 1.57 2.24 44.92 0.10 1.67 16 3 C -0.14 -3.12 9.15 71.98 0.66 -2.46 16 4 N -0.53 -16.61 5.03 -860.38 -4.33 -20.94 16 5 C 0.05 1.57 5.33 86.78 0.46 2.03 16 6 C -0.11 -4.16 6.23 31.98 0.20 -3.96 16 7 C -0.09 -3.92 2.87 -9.61 -0.03 -3.95 16 8 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 9 C 0.02 1.33 3.64 29.85 0.11 1.44 16 10 C -0.61 -35.40 8.81 25.60 0.23 -35.17 16 11 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 12 C -0.04 -2.48 5.46 84.66 0.46 -2.02 16 13 N -0.94 -59.82 13.65 21.45 0.29 -59.53 16 14 Si 1.12 51.06 29.90 68.60 2.05 53.11 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 18 C 0.05 1.99 5.76 86.64 0.50 2.49 16 19 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 20 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.06 1.09 6.74 -2.39 -0.02 1.08 16 22 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 23 H 0.04 1.07 6.82 -2.38 -0.02 1.05 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 1.47 7.32 -2.39 -0.02 1.45 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.05 2.21 7.94 -2.39 -0.02 2.19 16 30 H -0.01 -0.72 7.86 -2.39 -0.02 -0.74 16 31 H -0.02 -0.96 8.01 -2.39 -0.02 -0.98 16 32 H 0.25 16.42 7.22 -92.71 -0.67 15.75 16 33 H 0.06 2.27 7.82 -2.39 -0.02 2.25 16 34 H 0.06 1.90 6.67 -2.39 -0.02 1.88 16 Total: -1.00 -65.41 267.60 2.48 -62.93 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.13 Total: 6.42 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 3.33 Total: -42.00 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -4.03 Total: -80.47 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -65.41 2.48 -62.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.670 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds