Wall clock time and date at job start Thu Apr 9 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 N 1.46898 * 109.47256 * 119.99837 * 2 1 3 5 5 C 1.47905 * 110.99773 * 63.35347 * 4 2 1 6 6 C 1.53998 * 107.05540 * 145.84111 * 5 4 2 7 7 C 1.54597 * 105.14427 * 358.77879 * 6 5 4 8 8 H 1.09000 * 110.72294 * 96.39261 * 7 6 5 9 9 C 1.53000 * 110.72689 * 219.68242 * 7 6 5 10 10 C 1.50698 * 109.46935 * 293.54338 * 9 7 6 11 11 H 1.07998 * 120.00134 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99871 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99928 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99934 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47457 * 89.99620 * 14 12 10 16 16 H 1.48499 * 109.46995 * 209.99843 * 14 12 10 17 17 H 1.48499 * 109.47153 * 329.99347 * 14 12 10 18 18 C 1.48532 * 111.00204 * 180.74840 * 4 2 1 19 19 H 1.09006 * 109.46619 * 304.09087 * 1 2 3 20 20 H 1.08998 * 109.47429 * 64.08675 * 1 2 3 21 21 H 1.08999 * 109.47303 * 184.09769 * 1 2 3 22 22 H 1.09003 * 109.47057 * 239.99645 * 2 1 3 23 23 H 1.08994 * 109.47394 * 59.99951 * 3 2 1 24 24 H 1.08998 * 109.47181 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46720 * 299.99950 * 3 2 1 26 26 H 1.08998 * 109.91410 * 26.49599 * 5 4 2 27 27 H 1.08994 * 109.91984 * 265.19548 * 5 4 2 28 28 H 1.08998 * 110.31566 * 239.85898 * 6 5 4 29 29 H 1.09008 * 110.38824 * 117.73594 * 6 5 4 30 30 H 1.09001 * 109.47031 * 53.54144 * 9 7 6 31 31 H 1.08994 * 109.46781 * 173.54002 * 9 7 6 32 32 H 0.96998 * 120.00009 * 180.02562 * 13 12 10 33 33 H 1.09004 * 110.66724 * 81.84453 * 18 4 2 34 34 H 1.08998 * 110.67047 * 318.72069 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6125 -2.1143 1.1939 6 6 2.7485 -2.9121 1.8608 7 6 3.8276 -1.8620 2.2114 8 1 3.7301 -1.5401 3.2482 9 6 5.2287 -2.4154 1.9441 10 6 5.5128 -3.5460 2.8991 11 1 4.7684 -3.8407 3.6238 12 6 6.7228 -4.2050 2.8468 13 7 6.9705 -5.1919 3.6799 14 14 8.0102 -3.6958 1.5927 15 1 8.8867 -2.6505 2.1795 16 1 8.8298 -4.8759 1.2177 17 1 7.3374 -3.1562 0.3838 18 6 3.5044 -0.6966 1.2429 19 1 -0.3633 0.5761 0.8511 20 1 -0.3634 0.4491 -0.9243 21 1 -0.3634 -1.0250 0.0734 22 1 1.8933 -0.5139 -0.8900 23 1 1.6768 1.9564 0.8899 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.4711 -2.4561 0.1686 27 1 0.6895 -2.2385 1.7601 28 1 3.1504 -3.6503 1.1669 29 1 2.3884 -3.4012 2.7659 30 1 5.2849 -2.7826 0.9193 31 1 5.9651 -1.6248 2.0876 32 1 7.8219 -5.6553 3.6434 33 1 3.8803 0.2473 1.6377 34 1 3.9177 -0.8927 0.2535 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:47 Heat of formation + Delta-G solvation = -34.539836 kcal Electronic energy + Delta-G solvation = -12891.612760 eV Core-core repulsion = 10822.765605 eV Total energy + Delta-G solvation = -2068.847155 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27257 -36.34591 -34.60322 -32.17641 -30.16311 -28.64830 -27.52451 -24.10604 -22.91173 -21.11122 -20.43130 -18.85258 -17.26052 -16.70785 -16.04004 -15.51682 -14.95524 -14.74668 -14.21917 -13.94801 -13.87996 -13.27731 -13.12953 -12.94597 -12.89812 -12.66638 -12.13378 -12.01755 -11.77883 -11.73050 -11.62663 -11.40150 -11.24625 -11.05863 -10.74576 -9.32545 -8.27689 -6.30697 1.35127 1.36559 1.48292 2.36357 3.05303 3.07554 3.82848 3.84318 4.05752 4.19609 4.26027 4.36797 4.46890 4.62320 4.71937 4.84928 4.90637 4.93340 4.98308 4.98965 5.02467 5.06187 5.18906 5.24948 5.34894 5.40367 5.45507 5.63305 5.68246 5.98780 6.24850 6.32179 6.76879 7.33187 8.89191 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.059818 B = 0.008198 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.974172 B = 3414.730156 C = 3702.361981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 C -0.141 4.141 4 N -0.521 5.521 5 C 0.046 3.954 6 C -0.115 4.115 7 C -0.075 4.075 8 H 0.058 0.942 9 C 0.000 4.000 10 C -0.521 4.521 11 H 0.033 0.967 12 C 0.002 3.998 13 N -0.953 5.953 14 Si 0.949 3.051 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.249 1.249 18 C 0.048 3.952 19 H 0.060 0.940 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 11.533 -9.957 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 C -0.198 4.198 4 N -0.246 5.246 5 C -0.081 4.081 6 C -0.153 4.153 7 C -0.095 4.095 8 H 0.077 0.923 9 C -0.038 4.038 10 C -0.559 4.559 11 H 0.051 0.949 12 C -0.194 4.194 13 N -0.594 5.594 14 Si 0.772 3.228 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.172 1.172 18 C -0.080 4.080 19 H 0.079 0.921 20 H 0.093 0.907 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.370 11.704 -9.483 18.288 hybrid contribution 1.179 -0.896 -0.635 1.611 sum -9.191 10.808 -10.118 17.426 Atomic orbital electron populations 1.21795 0.93015 1.02083 1.02600 1.21963 0.96908 0.95793 0.90230 1.21827 1.00816 0.94480 1.02709 1.64844 1.08656 1.12654 1.38442 1.22803 0.98250 0.87688 0.99405 1.22280 0.95334 0.97693 1.00015 1.21861 0.94719 0.94379 0.98500 0.92329 1.19520 0.93950 0.94699 0.95634 1.21411 1.00800 1.16149 1.17543 0.94895 1.26004 1.00836 0.94703 0.97872 1.70070 1.25066 1.24445 1.39791 0.85679 0.78782 0.78050 0.80261 1.19142 1.21061 1.17211 1.23203 0.88199 0.98750 0.97858 0.92086 0.90693 0.92928 0.94688 0.92050 0.93203 0.90560 0.93374 0.89872 0.92809 0.92783 0.96508 0.96389 0.92611 0.89723 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.22 71.98 0.66 -1.96 16 2 C 0.06 1.38 2.36 44.92 0.11 1.49 16 3 C -0.14 -2.83 9.03 71.98 0.65 -2.18 16 4 N -0.52 -15.23 5.11 -857.84 -4.38 -19.62 16 5 C 0.05 1.38 5.43 86.45 0.47 1.85 16 6 C -0.11 -4.35 6.02 31.48 0.19 -4.16 16 7 C -0.08 -3.04 3.04 -9.59 -0.03 -3.07 16 8 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 9 C 0.00 -0.01 3.45 29.85 0.10 0.09 16 10 C -0.52 -30.35 9.23 25.60 0.24 -30.11 16 11 H 0.03 2.11 7.94 -2.91 -0.02 2.09 16 12 C 0.00 0.13 5.47 84.66 0.46 0.59 16 13 N -0.95 -60.55 13.96 21.45 0.30 -60.26 16 14 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 17 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 18 C 0.05 1.55 4.82 86.65 0.42 1.97 16 19 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.05 1.03 7.12 -2.39 -0.02 1.01 16 22 H 0.04 0.85 7.98 -2.39 -0.02 0.83 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.06 6.92 -2.39 -0.02 1.04 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.33 7.65 -2.39 -0.02 1.31 16 27 H 0.08 2.28 8.11 -2.39 -0.02 2.26 16 28 H 0.05 2.16 7.80 -2.39 -0.02 2.14 16 29 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 30 H 0.02 0.79 7.13 -2.39 -0.02 0.77 16 31 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.08 2.58 7.66 -2.38 -0.02 2.56 16 34 H 0.04 1.33 7.92 -2.39 -0.02 1.31 16 Total: -1.00 -64.47 266.31 2.04 -62.43 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.97 Total: 6.25 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.27 Total: -35.50 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -4.08 Total: -79.87 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -64.47 2.04 -62.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.887 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds