Wall clock time and date at job start Thu Apr 9 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.52994 * 109.47514 * 239.99601 * 2 1 3 5 5 C 1.53003 * 109.46974 * 300.00113 * 4 2 1 6 6 C 1.52997 * 109.47161 * 299.99640 * 5 4 2 7 7 C 1.53002 * 109.46825 * 60.00134 * 6 5 4 8 8 C 1.52993 * 109.47523 * 299.99969 * 7 6 5 9 9 C 1.50706 * 109.46862 * 300.00241 * 8 7 6 10 10 H 1.08001 * 119.99896 * 357.10745 * 9 8 7 11 11 C 1.37879 * 119.99751 * 177.10635 * 9 8 7 12 12 N 1.31518 * 120.00268 * 0.87300 * 11 9 8 13 13 Si 1.86801 * 119.99852 * 180.86802 * 11 9 8 14 14 H 1.48490 * 109.47113 * 270.00318 * 13 11 9 15 15 H 1.48504 * 109.46775 * 30.00415 * 13 11 9 16 16 H 1.48498 * 109.46964 * 150.00286 * 13 11 9 17 17 C 1.52994 * 109.47356 * 179.97438 * 8 7 6 18 18 N 1.46903 * 109.47116 * 55.01418 * 17 8 7 19 19 H 1.08997 * 109.47477 * 300.00147 * 1 2 3 20 20 H 1.09000 * 109.46721 * 60.00815 * 1 2 3 21 21 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46760 * 59.99816 * 4 2 1 23 23 H 1.08993 * 109.47030 * 180.02562 * 4 2 1 24 24 H 1.09003 * 109.47298 * 60.00105 * 5 4 2 25 25 H 1.09006 * 109.47023 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.46731 * 179.97438 * 6 5 4 27 27 H 1.08993 * 109.47400 * 300.00393 * 6 5 4 28 28 H 1.08998 * 109.46941 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.46912 * 59.99976 * 7 6 5 30 30 H 0.97003 * 119.99838 * 5.56767 * 12 11 9 31 31 H 1.09004 * 109.47052 * 175.01331 * 17 8 7 32 32 H 1.09004 * 109.47518 * 295.00966 * 17 8 7 33 33 H 1.00897 * 111.00334 * 62.08949 * 18 17 8 34 34 H 1.00902 * 110.99684 * 186.04672 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 -2.1638 -1.2490 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1636 1.2494 8 6 2.0400 -0.7212 1.2494 9 6 3.5470 -0.7211 1.2494 10 1 4.0870 -1.6553 1.2967 11 6 4.2364 0.4714 1.1892 12 7 3.5789 1.6098 1.1490 13 14 6.1042 0.4703 1.1647 14 1 6.6175 0.5301 2.5568 15 1 6.5899 -0.7714 0.5109 16 1 6.5900 1.6514 0.4069 17 6 1.5294 0.0003 2.4982 18 7 1.9177 -0.7579 3.6950 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6768 -0.2075 -2.1391 23 1 3.1301 -0.7216 -1.2488 24 1 0.4401 -2.1639 -1.2491 25 1 1.8932 -2.6776 -2.1392 26 1 1.6764 -3.9125 0.0005 27 1 3.1301 -2.8849 0.0003 28 1 1.8930 -2.6776 2.1394 29 1 0.4400 -2.1637 1.2493 30 1 2.6134 1.6158 1.2430 31 1 1.9638 0.9990 2.5440 32 1 0.4430 0.0784 2.4541 33 1 2.9218 -0.8150 3.7769 34 1 1.5094 -0.3564 4.5257 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260970529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:06 Heat of formation + Delta-G solvation = -16.414733 kcal Electronic energy + Delta-G solvation = -14040.695547 eV Core-core repulsion = 11972.634355 eV Total energy + Delta-G solvation = -2068.061192 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.90504 -33.98099 -32.00852 -30.85681 -29.15239 -26.21500 -24.07563 -23.33328 -21.10765 -19.78104 -17.90371 -16.22389 -15.08037 -14.38046 -14.01055 -13.79158 -13.27360 -12.82478 -12.71190 -11.88534 -11.79384 -11.56472 -11.13639 -10.93771 -10.71004 -10.50518 -10.38552 -10.22136 -10.02013 -9.88998 -9.45169 -8.92248 -8.74630 -8.21393 -8.11088 -7.59254 -6.09741 -3.94599 3.43639 3.47233 3.62516 4.55752 5.40241 5.69048 5.74451 5.79161 5.91913 6.15370 6.22588 6.34715 6.39887 6.53933 6.60853 6.65685 6.68629 6.77368 6.83321 6.88470 6.97887 7.10032 7.20324 7.30287 7.41432 7.50030 7.68563 7.79219 8.26939 8.42254 8.46345 8.60167 8.98486 9.71639 11.10325 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.017522 C = 0.015323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.647706 B = 1597.652676 C = 1826.837521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.084 4.084 8 C 0.069 3.931 9 C -0.563 4.563 10 H 0.049 0.951 11 C 0.020 3.980 12 N -0.924 5.924 13 Si 1.058 2.942 14 H -0.292 1.292 15 H -0.290 1.290 16 H -0.287 1.287 17 C 0.060 3.940 18 N -0.843 5.843 19 H 0.043 0.957 20 H 0.033 0.967 21 H 0.050 0.950 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.279 0.721 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.345 0.655 34 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 -3.756 -0.885 5.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 H 0.101 0.899 4 C -0.131 4.131 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.122 4.122 8 C 0.069 3.931 9 C -0.602 4.602 10 H 0.067 0.933 11 C -0.183 4.183 12 N -0.566 5.566 13 Si 0.888 3.112 14 H -0.219 1.219 15 H -0.217 1.217 16 H -0.213 1.213 17 C -0.071 4.071 18 N -0.371 5.371 19 H 0.062 0.938 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.158 0.842 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.262 -3.378 -1.382 4.294 hybrid contribution -0.870 -0.046 0.425 0.969 sum -3.132 -3.424 -0.957 4.738 Atomic orbital electron populations 1.22057 0.98648 1.00517 0.99497 1.21326 0.91928 1.01780 0.96446 0.89912 1.21306 1.01714 0.93928 0.96183 1.21488 0.99288 0.97028 0.97110 1.21467 1.01563 0.96263 0.95492 1.21300 0.97105 0.97608 0.96168 1.18212 0.95410 0.90694 0.88825 1.21877 0.90478 0.94451 1.53401 0.93309 1.25555 1.05987 0.92492 0.94261 1.70848 1.11161 1.27663 1.46955 0.83700 0.75626 0.75370 0.76532 1.21895 1.21665 1.21307 1.22111 0.96458 0.96273 0.92289 1.58776 1.16351 1.57823 1.04106 0.93782 0.94784 0.93140 0.95007 0.91026 0.93438 0.94157 0.94941 0.91459 0.92422 0.95170 0.90411 0.94598 0.94672 0.84210 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.15 37.16 0.30 -2.62 16 2 C -0.10 -2.13 1.93 -90.62 -0.17 -2.30 16 3 H 0.08 2.10 5.10 -51.93 -0.26 1.83 16 4 C -0.09 -1.99 5.23 -26.73 -0.14 -2.13 16 5 C -0.11 -2.12 5.65 -26.73 -0.15 -2.27 16 6 C -0.11 -2.20 5.70 -26.73 -0.15 -2.36 16 7 C -0.08 -1.81 4.20 -26.73 -0.11 -1.92 16 8 C 0.07 1.59 0.10 -155.66 -0.02 1.57 16 9 C -0.56 -14.36 5.14 -34.44 -0.18 -14.54 16 10 H 0.05 1.29 6.82 -52.49 -0.36 0.93 16 11 C 0.02 0.53 5.13 -17.82 -0.09 0.44 16 12 N -0.92 -25.87 12.26 55.43 0.68 -25.19 16 13 Si 1.06 24.41 29.90 -169.99 -5.08 19.32 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.06 1.35 5.23 -3.83 -0.02 1.33 16 18 N -0.84 -17.32 8.59 -10.37 -0.09 -17.41 16 19 H 0.04 0.84 6.32 -51.93 -0.33 0.51 16 20 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.95 4.81 -51.93 -0.25 0.70 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.69 7.22 -51.93 -0.37 1.31 16 24 H 0.05 0.86 6.43 -51.93 -0.33 0.52 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.45 6.68 -51.93 -0.35 1.10 16 28 H 0.06 1.29 7.47 -51.93 -0.39 0.90 16 29 H 0.03 0.62 6.43 -51.93 -0.33 0.29 16 30 H 0.28 7.67 3.40 -40.82 -0.14 7.53 16 31 H 0.04 0.90 5.37 -51.93 -0.28 0.62 16 32 H 0.03 0.76 6.17 -51.93 -0.32 0.44 16 33 H 0.34 7.47 8.24 -39.29 -0.32 7.15 16 34 H 0.31 5.61 9.08 -39.29 -0.36 5.25 16 LS Contribution 240.65 15.07 3.63 3.63 Total: -1.00 -26.70 240.65 -6.48 -33.18 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -4.88 Total: 11.27 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -0.73 Total: -24.80 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.59 Total: -42.60 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.70 -6.48 -33.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.765 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds