Wall clock time and date at job start Thu Apr 9 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.52994 * 109.47514 * 239.99601 * 2 1 3 5 5 C 1.53003 * 109.46974 * 300.00113 * 4 2 1 6 6 C 1.52997 * 109.47161 * 299.99640 * 5 4 2 7 7 C 1.53002 * 109.46825 * 60.00134 * 6 5 4 8 8 C 1.52993 * 109.47523 * 299.99969 * 7 6 5 9 9 C 1.50706 * 109.46862 * 300.00241 * 8 7 6 10 10 H 1.08001 * 119.99896 * 357.10745 * 9 8 7 11 11 C 1.37879 * 119.99751 * 177.10635 * 9 8 7 12 12 N 1.31518 * 120.00268 * 0.87300 * 11 9 8 13 13 Si 1.86801 * 119.99852 * 180.86802 * 11 9 8 14 14 H 1.48490 * 109.47113 * 270.00318 * 13 11 9 15 15 H 1.48504 * 109.46775 * 30.00415 * 13 11 9 16 16 H 1.48498 * 109.46964 * 150.00286 * 13 11 9 17 17 C 1.52994 * 109.47356 * 179.97438 * 8 7 6 18 18 N 1.46903 * 109.47116 * 55.01418 * 17 8 7 19 19 H 1.08997 * 109.47477 * 300.00147 * 1 2 3 20 20 H 1.09000 * 109.46721 * 60.00815 * 1 2 3 21 21 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46760 * 59.99816 * 4 2 1 23 23 H 1.08993 * 109.47030 * 180.02562 * 4 2 1 24 24 H 1.09003 * 109.47298 * 60.00105 * 5 4 2 25 25 H 1.09006 * 109.47023 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.46731 * 179.97438 * 6 5 4 27 27 H 1.08993 * 109.47400 * 300.00393 * 6 5 4 28 28 H 1.08998 * 109.46941 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.46912 * 59.99976 * 7 6 5 30 30 H 0.97003 * 119.99838 * 5.56767 * 12 11 9 31 31 H 1.09004 * 109.47052 * 175.01331 * 17 8 7 32 32 H 1.09004 * 109.47518 * 295.00966 * 17 8 7 33 33 H 1.00897 * 111.00334 * 62.08949 * 18 17 8 34 34 H 1.00902 * 110.99684 * 186.04672 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 -2.1638 -1.2490 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1636 1.2494 8 6 2.0400 -0.7212 1.2494 9 6 3.5470 -0.7211 1.2494 10 1 4.0870 -1.6553 1.2967 11 6 4.2364 0.4714 1.1892 12 7 3.5789 1.6098 1.1490 13 14 6.1042 0.4703 1.1647 14 1 6.6175 0.5301 2.5568 15 1 6.5899 -0.7714 0.5109 16 1 6.5900 1.6514 0.4069 17 6 1.5294 0.0003 2.4982 18 7 1.9177 -0.7579 3.6950 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6768 -0.2075 -2.1391 23 1 3.1301 -0.7216 -1.2488 24 1 0.4401 -2.1639 -1.2491 25 1 1.8932 -2.6776 -2.1392 26 1 1.6764 -3.9125 0.0005 27 1 3.1301 -2.8849 0.0003 28 1 1.8930 -2.6776 2.1394 29 1 0.4400 -2.1637 1.2493 30 1 2.6134 1.6158 1.2430 31 1 1.9638 0.9990 2.5440 32 1 0.4430 0.0784 2.4541 33 1 2.9218 -0.8150 3.7769 34 1 1.5094 -0.3564 4.5257 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260970529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:06 Heat of formation + Delta-G solvation = -32.588371 kcal Electronic energy + Delta-G solvation = -14041.396888 eV Core-core repulsion = 11972.634355 eV Total energy + Delta-G solvation = -2068.762533 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64998 -35.72814 -33.89703 -32.53561 -30.86041 -27.97333 -25.96917 -25.05194 -22.79265 -21.49413 -19.77743 -18.06592 -16.80302 -16.02603 -15.80493 -15.62315 -14.93544 -14.57259 -14.46183 -13.59384 -13.46311 -13.27534 -12.85842 -12.71181 -12.49425 -12.22359 -12.09841 -11.97455 -11.84460 -11.58125 -11.11648 -10.67639 -10.47087 -10.15569 -10.01122 -9.34847 -8.15020 -6.01001 1.55645 1.60971 1.77844 2.65184 3.38848 3.99402 4.12859 4.18730 4.27995 4.52373 4.63794 4.73080 4.74845 4.89247 4.93808 4.98996 5.03766 5.09808 5.20679 5.27048 5.29115 5.39424 5.44484 5.60628 5.72003 5.79466 5.91825 6.03238 6.39348 6.50980 6.57993 6.84786 6.99220 7.70023 9.05042 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.017522 C = 0.015323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.647706 B = 1597.652676 C = 1826.837521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.048 0.952 4 C -0.093 4.093 5 C -0.105 4.105 6 C -0.109 4.109 7 C -0.079 4.079 8 C 0.063 3.937 9 C -0.556 4.556 10 H 0.034 0.966 11 C -0.020 4.020 12 N -0.952 5.952 13 Si 1.093 2.907 14 H -0.282 1.282 15 H -0.281 1.281 16 H -0.295 1.295 17 C 0.066 3.934 18 N -0.837 5.837 19 H 0.042 0.958 20 H 0.049 0.951 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.275 0.725 31 H 0.007 0.993 32 H 0.046 0.954 33 H 0.338 0.662 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -4.957 -1.245 6.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.066 0.934 4 C -0.131 4.131 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.117 4.117 8 C 0.062 3.938 9 C -0.595 4.595 10 H 0.052 0.948 11 C -0.219 4.219 12 N -0.595 5.595 13 Si 0.920 3.080 14 H -0.209 1.209 15 H -0.206 1.206 16 H -0.221 1.221 17 C -0.065 4.065 18 N -0.364 5.364 19 H 0.061 0.939 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.150 0.850 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.225 -4.594 -1.726 5.872 hybrid contribution -0.593 0.316 0.554 0.871 sum -3.819 -4.277 -1.173 5.853 Atomic orbital electron populations 1.21956 0.96112 1.01509 1.00295 1.21242 0.94075 0.99739 0.96606 0.93373 1.21264 0.99717 0.95907 0.96219 1.21447 1.00260 0.95117 0.97418 1.21437 1.00160 0.97764 0.95289 1.21223 0.97639 0.96297 0.96493 1.18262 0.94005 0.92072 0.89416 1.22011 0.92098 0.93417 1.51968 0.94775 1.26433 1.08669 0.92501 0.94286 1.70896 1.11234 1.28414 1.48967 0.83214 0.72626 0.75288 0.76903 1.20863 1.20629 1.22121 1.21985 0.96805 0.94854 0.92898 1.58744 1.15851 1.57428 1.04413 0.93859 0.93240 0.91867 0.93748 0.94271 0.91628 0.92122 0.92304 0.93767 0.93669 0.94017 0.90869 0.97503 0.93541 0.84995 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.15 71.98 0.59 -4.59 16 2 C -0.10 -4.26 1.93 -10.79 -0.02 -4.28 16 3 H 0.05 2.47 5.10 -2.39 -0.01 2.46 16 4 C -0.09 -3.86 5.23 30.59 0.16 -3.70 16 5 C -0.11 -3.67 5.65 30.59 0.17 -3.49 16 6 C -0.11 -4.09 5.70 30.59 0.17 -3.92 16 7 C -0.08 -3.23 4.20 30.59 0.13 -3.10 16 8 C 0.06 2.86 0.10 -52.93 -0.01 2.85 16 9 C -0.56 -28.50 5.14 25.60 0.13 -28.37 16 10 H 0.03 1.82 6.82 -2.91 -0.02 1.80 16 11 C -0.02 -1.10 5.13 84.65 0.43 -0.66 16 12 N -0.95 -54.31 12.26 21.45 0.26 -54.05 16 13 Si 1.09 49.71 29.90 68.60 2.05 51.76 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 C 0.07 2.94 5.23 86.30 0.45 3.39 16 18 N -0.84 -33.60 8.59 -186.71 -1.60 -35.21 16 19 H 0.04 1.56 6.32 -2.39 -0.02 1.55 16 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 2.14 4.81 -2.39 -0.01 2.13 16 22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.04 1.84 7.22 -2.39 -0.02 1.82 16 24 H 0.07 2.08 6.43 -2.39 -0.02 2.07 16 25 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.85 6.68 -2.39 -0.02 1.84 16 28 H 0.04 1.94 7.47 -2.39 -0.02 1.92 16 29 H 0.04 1.60 6.43 -2.39 -0.02 1.58 16 30 H 0.28 15.51 3.40 -92.71 -0.32 15.20 16 31 H 0.01 0.35 5.37 -2.38 -0.01 0.34 16 32 H 0.05 1.94 6.17 -2.38 -0.01 1.93 16 33 H 0.34 14.52 8.24 -89.70 -0.74 13.78 16 34 H 0.33 11.37 9.08 -89.69 -0.81 10.56 16 Total: -1.00 -56.37 240.65 2.93 -53.44 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.01 Total: 29.92 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 2.21 Total: -45.87 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -1.34 Total: -89.26 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -56.37 2.93 -53.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.850 kcal (2) G-P(sol) polarization free energy of solvation -56.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds