Wall clock time and date at job start Thu Apr 9 2020 14:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47234 * 120.00218 * 2 1 3 5 5 C 1.52997 * 109.47136 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47579 * 300.00302 * 5 4 2 7 7 C 1.52998 * 109.47133 * 59.99696 * 6 5 4 8 8 C 1.50702 * 109.47060 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00163 * 242.78247 * 8 7 6 10 10 C 1.37881 * 119.99785 * 62.79157 * 8 7 6 11 11 N 1.31507 * 119.99814 * 353.59875 * 10 8 7 12 12 Si 1.86798 * 119.99717 * 173.59800 * 10 8 7 13 13 H 1.48504 * 109.46891 * 90.00149 * 12 10 8 14 14 H 1.48506 * 109.47008 * 209.99583 * 12 10 8 15 15 H 1.48492 * 109.47458 * 329.99951 * 12 10 8 16 16 C 1.53007 * 109.47095 * 60.00368 * 7 6 5 17 17 N 1.46895 * 109.47070 * 64.72727 * 16 7 6 18 18 C 1.52998 * 109.47443 * 300.00352 * 7 6 5 19 19 H 1.09002 * 109.47016 * 300.00092 * 1 2 3 20 20 H 1.08999 * 109.47460 * 59.99718 * 1 2 3 21 21 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46726 * 59.99931 * 4 2 1 23 23 H 1.08997 * 109.47251 * 300.00075 * 4 2 1 24 24 H 1.09005 * 109.46762 * 179.97438 * 5 4 2 25 25 H 1.09008 * 109.46919 * 60.00601 * 5 4 2 26 26 H 1.08995 * 109.47465 * 299.99899 * 6 5 4 27 27 H 1.09000 * 109.47355 * 179.97438 * 6 5 4 28 28 H 0.96999 * 119.99626 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46636 * 304.72949 * 16 7 6 30 30 H 1.08996 * 109.47362 * 184.73115 * 16 7 6 31 31 H 1.00906 * 110.99753 * 173.91960 * 17 16 7 32 32 H 1.00896 * 111.00547 * 297.87040 * 17 16 7 33 33 H 1.08997 * 109.47155 * 179.97438 * 18 7 6 34 34 H 1.09004 * 109.46465 * 299.99538 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0004 7 6 3.5695 -0.7220 -1.2496 8 6 4.0720 -1.4323 -2.4801 9 1 4.7294 -0.9214 -3.1679 10 6 3.6921 -2.7344 -2.7278 11 7 2.9960 -3.3982 -1.8311 12 14 4.1665 -3.5555 -4.3372 13 1 5.4799 -4.2305 -4.1802 14 1 3.1349 -4.5589 -4.7038 15 1 4.2618 -2.5300 -5.4069 16 6 4.0800 0.7204 -1.2498 17 7 5.5445 0.7215 -1.3643 18 6 2.0395 -0.7215 -1.2493 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6766 -1.7490 1.2491 23 1 1.6767 -0.2075 2.1392 24 1 3.9333 -1.2353 2.1391 25 1 3.9337 0.3058 1.2488 26 1 3.7159 -2.4708 -0.0003 27 1 5.1695 -1.4432 -0.0008 28 1 2.7291 -4.3143 -2.0052 29 1 3.7878 1.2093 -0.3204 30 1 3.6491 1.2582 -2.0943 31 1 5.8985 1.6609 -1.4662 32 1 5.9693 0.2588 -0.5747 33 1 1.6762 -0.2072 -2.1390 34 1 1.6759 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:12 Heat of formation + Delta-G solvation = -25.147223 kcal Electronic energy + Delta-G solvation = -13738.981507 eV Core-core repulsion = 11670.541646 eV Total energy + Delta-G solvation = -2068.439861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.49279 -33.88618 -32.34376 -30.96074 -29.16036 -25.44642 -24.68518 -23.43770 -20.97533 -19.80902 -17.52557 -16.06223 -15.05325 -14.39118 -14.13363 -13.62962 -13.31604 -12.97816 -12.55419 -12.39424 -11.87102 -11.38718 -10.98221 -10.86402 -10.71579 -10.61417 -10.41915 -10.08015 -9.92088 -9.66848 -9.60500 -9.03110 -8.88442 -8.29224 -8.06231 -7.53941 -5.77961 -3.81657 3.40948 3.47523 3.52857 4.58908 5.40746 5.58468 5.63149 5.72204 5.81160 6.05613 6.15474 6.31684 6.38318 6.44145 6.54447 6.58432 6.72134 6.76065 6.81327 6.88835 6.93440 7.14864 7.22767 7.25077 7.65109 7.83633 7.90973 8.10433 8.22232 8.36366 8.43310 8.74500 9.22185 9.80228 11.23056 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.014940 C = 0.012670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.356513 B = 1873.733972 C = 2209.368194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.051 0.949 4 C -0.102 4.102 5 C -0.122 4.122 6 C -0.107 4.107 7 C 0.079 3.921 8 C -0.475 4.475 9 H 0.064 0.936 10 C 0.056 3.944 11 N -0.894 5.894 12 Si 0.886 3.114 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.075 3.925 17 N -0.834 5.834 18 C -0.099 4.099 19 H 0.038 0.962 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.004 0.996 30 H 0.049 0.951 31 H 0.315 0.685 32 H 0.333 0.667 33 H 0.031 0.969 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 5.417 4.569 7.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.069 0.931 4 C -0.139 4.139 5 C -0.160 4.160 6 C -0.145 4.145 7 C 0.079 3.921 8 C -0.513 4.513 9 H 0.082 0.918 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.715 3.285 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.202 1.202 16 C -0.055 4.055 17 N -0.362 5.362 18 C -0.137 4.137 19 H 0.057 0.943 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.113 0.887 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.049 0.951 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.614 4.803 3.915 6.403 hybrid contribution 0.199 0.091 0.056 0.226 sum -1.415 4.894 3.971 6.459 Atomic orbital electron populations 1.21821 0.97109 1.01142 0.99893 1.21266 0.93766 0.98936 0.97477 0.93060 1.21444 0.96076 1.00298 0.96109 1.21692 0.95511 0.99431 0.99329 1.21661 0.97796 1.02799 0.92243 1.18065 0.91064 0.88940 0.94059 1.21165 1.27109 0.96789 1.06278 0.91812 1.24943 0.95720 0.97373 0.96257 1.69816 1.39840 1.10442 1.33375 0.86698 0.77784 0.79079 0.84956 1.21154 1.21713 1.20221 1.22012 0.86983 0.99971 0.96559 1.58622 1.07043 1.20681 1.49876 1.21653 0.97896 1.01744 0.92449 0.94281 0.93527 0.92995 0.92175 0.94563 0.94407 0.94102 0.88684 0.94849 0.93545 0.97761 0.93285 0.87510 0.85456 0.95056 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 37.16 0.34 -2.05 16 2 C -0.10 -1.84 2.45 -90.62 -0.22 -2.06 16 3 H 0.05 0.96 6.54 -51.93 -0.34 0.63 16 4 C -0.10 -1.91 5.20 -26.73 -0.14 -2.05 16 5 C -0.12 -2.36 5.65 -26.74 -0.15 -2.52 16 6 C -0.11 -2.45 4.30 -26.74 -0.11 -2.57 16 7 C 0.08 1.87 0.32 -155.66 -0.05 1.82 16 8 C -0.47 -12.81 7.59 -34.44 -0.26 -13.08 16 9 H 0.06 1.80 7.47 -52.48 -0.39 1.41 16 10 C 0.06 1.52 5.12 -17.82 -0.09 1.43 16 11 N -0.89 -24.65 9.40 55.43 0.52 -24.13 16 12 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.07 1.57 4.98 -3.82 -0.02 1.55 16 17 N -0.83 -16.20 8.80 -10.37 -0.09 -16.29 16 18 C -0.10 -2.27 3.76 -26.73 -0.10 -2.37 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.75 6.33 -51.92 -0.33 0.43 16 26 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 27 H 0.03 0.77 6.81 -51.93 -0.35 0.41 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.00 0.09 4.82 -51.93 -0.25 -0.16 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.31 5.13 9.08 -39.29 -0.36 4.77 16 32 H 0.33 6.26 7.46 -39.29 -0.29 5.96 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.42 6.11 -51.93 -0.32 2.10 16 LS Contribution 251.76 15.07 3.79 3.79 Total: -1.00 -27.21 251.76 -7.07 -34.28 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.46 Total: 7.57 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.81 Total: -21.90 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.43 Total: -40.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.21 -7.07 -34.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.136 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds