Wall clock time and date at job start Thu Apr 9 2020 14:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47234 * 120.00218 * 2 1 3 5 5 C 1.52997 * 109.47136 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47579 * 300.00302 * 5 4 2 7 7 C 1.52998 * 109.47133 * 59.99696 * 6 5 4 8 8 C 1.50702 * 109.47060 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00163 * 242.78247 * 8 7 6 10 10 C 1.37881 * 119.99785 * 62.79157 * 8 7 6 11 11 N 1.31507 * 119.99814 * 353.59875 * 10 8 7 12 12 Si 1.86798 * 119.99717 * 173.59800 * 10 8 7 13 13 H 1.48504 * 109.46891 * 90.00149 * 12 10 8 14 14 H 1.48506 * 109.47008 * 209.99583 * 12 10 8 15 15 H 1.48492 * 109.47458 * 329.99951 * 12 10 8 16 16 C 1.53007 * 109.47095 * 60.00368 * 7 6 5 17 17 N 1.46895 * 109.47070 * 64.72727 * 16 7 6 18 18 C 1.52998 * 109.47443 * 300.00352 * 7 6 5 19 19 H 1.09002 * 109.47016 * 300.00092 * 1 2 3 20 20 H 1.08999 * 109.47460 * 59.99718 * 1 2 3 21 21 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46726 * 59.99931 * 4 2 1 23 23 H 1.08997 * 109.47251 * 300.00075 * 4 2 1 24 24 H 1.09005 * 109.46762 * 179.97438 * 5 4 2 25 25 H 1.09008 * 109.46919 * 60.00601 * 5 4 2 26 26 H 1.08995 * 109.47465 * 299.99899 * 6 5 4 27 27 H 1.09000 * 109.47355 * 179.97438 * 6 5 4 28 28 H 0.96999 * 119.99626 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46636 * 304.72949 * 16 7 6 30 30 H 1.08996 * 109.47362 * 184.73115 * 16 7 6 31 31 H 1.00906 * 110.99753 * 173.91960 * 17 16 7 32 32 H 1.00896 * 111.00547 * 297.87040 * 17 16 7 33 33 H 1.08997 * 109.47155 * 179.97438 * 18 7 6 34 34 H 1.09004 * 109.46465 * 299.99538 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0004 7 6 3.5695 -0.7220 -1.2496 8 6 4.0720 -1.4323 -2.4801 9 1 4.7294 -0.9214 -3.1679 10 6 3.6921 -2.7344 -2.7278 11 7 2.9960 -3.3982 -1.8311 12 14 4.1665 -3.5555 -4.3372 13 1 5.4799 -4.2305 -4.1802 14 1 3.1349 -4.5589 -4.7038 15 1 4.2618 -2.5300 -5.4069 16 6 4.0800 0.7204 -1.2498 17 7 5.5445 0.7215 -1.3643 18 6 2.0395 -0.7215 -1.2493 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6766 -1.7490 1.2491 23 1 1.6767 -0.2075 2.1392 24 1 3.9333 -1.2353 2.1391 25 1 3.9337 0.3058 1.2488 26 1 3.7159 -2.4708 -0.0003 27 1 5.1695 -1.4432 -0.0008 28 1 2.7291 -4.3143 -2.0052 29 1 3.7878 1.2093 -0.3204 30 1 3.6491 1.2582 -2.0943 31 1 5.8985 1.6609 -1.4662 32 1 5.9693 0.2588 -0.5747 33 1 1.6762 -0.2072 -2.1390 34 1 1.6759 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:11 Heat of formation + Delta-G solvation = -41.872252 kcal Electronic energy + Delta-G solvation = -13739.706759 eV Core-core repulsion = 11670.541646 eV Total energy + Delta-G solvation = -2069.165113 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19309 -35.51751 -34.27870 -32.54226 -30.94953 -27.03489 -26.64878 -25.13028 -22.63509 -21.45101 -19.29989 -17.98918 -16.77639 -16.30644 -15.76132 -15.34695 -14.93639 -14.55369 -14.23739 -13.99542 -13.53916 -13.02766 -12.83946 -12.58538 -12.52028 -12.32313 -12.14408 -11.90086 -11.68402 -11.47299 -11.26672 -10.80483 -10.69215 -10.13284 -10.03117 -9.11406 -7.84571 -5.94104 1.42646 1.45491 1.54108 2.54604 3.34645 4.07052 4.11022 4.20334 4.28722 4.59286 4.63648 4.78390 4.79857 4.91624 4.97591 5.06378 5.08991 5.19929 5.22321 5.29290 5.35913 5.44652 5.55959 5.63558 5.84201 5.91148 6.00242 6.28794 6.39083 6.64621 6.76839 6.95032 7.13699 7.69293 9.12196 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033351 B = 0.014940 C = 0.012670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.356513 B = 1873.733972 C = 2209.368194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.063 0.937 4 C -0.099 4.099 5 C -0.116 4.116 6 C -0.100 4.100 7 C 0.070 3.930 8 C -0.488 4.488 9 H 0.046 0.954 10 C 0.015 3.985 11 N -0.907 5.907 12 Si 0.933 3.067 13 H -0.285 1.285 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.084 3.916 17 N -0.846 5.846 18 C -0.093 4.093 19 H 0.067 0.933 20 H 0.049 0.951 21 H 0.041 0.959 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.251 0.749 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.335 0.665 32 H 0.337 0.663 33 H 0.015 0.985 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 6.755 5.620 8.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.137 4.137 5 C -0.153 4.153 6 C -0.138 4.138 7 C 0.069 3.931 8 C -0.527 4.527 9 H 0.064 0.936 10 C -0.182 4.182 11 N -0.548 5.548 12 Si 0.762 3.238 13 H -0.212 1.212 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.046 4.046 17 N -0.376 5.376 18 C -0.132 4.132 19 H 0.086 0.914 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.034 0.966 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.769 6.153 4.965 8.102 hybrid contribution 0.285 -0.326 -0.302 0.528 sum -1.485 5.826 4.663 7.609 Atomic orbital electron populations 1.21771 0.95236 1.01031 1.01528 1.21199 0.95430 0.98801 0.95567 0.91875 1.21430 0.95494 0.99591 0.97167 1.21611 0.96019 0.99877 0.97793 1.21458 0.97077 1.01232 0.94041 1.18122 0.91520 0.90452 0.92961 1.21407 1.26748 0.97089 1.07430 0.93594 1.25482 0.96192 0.98077 0.98442 1.69961 1.40404 1.10260 1.34185 0.85948 0.77365 0.78171 0.82324 1.21158 1.21525 1.20332 1.21802 0.87778 0.97941 0.97122 1.58497 1.06349 1.22409 1.50318 1.21489 0.97566 1.00105 0.94053 0.91424 0.93139 0.94020 0.94083 0.91242 0.92940 0.92460 0.92234 0.95774 0.93950 0.95721 0.94221 0.85280 0.84987 0.96609 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.19 71.98 0.66 -3.65 16 2 C -0.09 -3.31 2.45 -10.79 -0.03 -3.34 16 3 H 0.06 2.16 6.54 -2.39 -0.02 2.14 16 4 C -0.10 -3.46 5.20 30.59 0.16 -3.30 16 5 C -0.12 -4.19 5.65 30.59 0.17 -4.02 16 6 C -0.10 -4.54 4.30 30.59 0.13 -4.41 16 7 C 0.07 3.28 0.32 -52.93 -0.02 3.27 16 8 C -0.49 -26.67 7.59 25.60 0.19 -26.47 16 9 H 0.05 2.62 7.47 -2.91 -0.02 2.60 16 10 C 0.02 0.84 5.12 84.66 0.43 1.27 16 11 N -0.91 -51.15 9.40 21.45 0.20 -50.95 16 12 Si 0.93 45.14 29.54 68.60 2.03 47.17 16 13 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 14 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 16 C 0.08 3.38 4.98 86.31 0.43 3.81 16 17 N -0.85 -31.50 8.80 -186.72 -1.64 -33.14 16 18 C -0.09 -4.29 3.76 30.59 0.12 -4.17 16 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.06 1.90 6.33 -2.38 -0.02 1.89 16 26 H 0.06 3.15 6.06 -2.39 -0.01 3.13 16 27 H 0.02 1.10 6.81 -2.39 -0.02 1.08 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.02 0.90 4.82 -2.39 -0.01 0.89 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.34 10.18 9.08 -89.69 -0.81 9.36 16 32 H 0.34 12.12 7.46 -89.70 -0.67 11.45 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 3.19 6.11 -2.38 -0.01 3.18 16 Total: -1.00 -58.23 251.76 2.44 -55.79 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.40 Total: 22.15 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 2.25 Total: -41.02 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.44 Total: -84.09 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -58.23 2.44 -55.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.913 kcal (2) G-P(sol) polarization free energy of solvation -58.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds