Wall clock time and date at job start Thu Apr 9 2020 14:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47334 * 2 1 4 4 C 1.52999 * 109.47144 * 239.99584 * 2 1 3 5 5 C 1.53005 * 109.47007 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47203 * 60.00077 * 5 4 2 7 7 C 1.52999 * 109.47076 * 299.99881 * 6 5 4 8 8 C 1.50701 * 109.47086 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99748 * 0.67304 * 8 7 6 10 10 C 1.37877 * 120.00054 * 180.68136 * 8 7 6 11 11 N 1.31511 * 119.99955 * 1.59160 * 10 8 7 12 12 Si 1.86801 * 119.99920 * 181.32181 * 10 8 7 13 13 H 1.48499 * 109.47335 * 180.26796 * 12 10 8 14 14 H 1.48493 * 109.47064 * 300.27286 * 12 10 8 15 15 H 1.48500 * 109.47044 * 60.27182 * 12 10 8 16 16 C 1.52995 * 109.47408 * 300.00187 * 7 6 5 17 17 N 1.46901 * 109.46801 * 294.90608 * 16 7 6 18 18 C 1.52999 * 109.46990 * 119.99707 * 2 1 3 19 19 H 1.09001 * 109.47334 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47760 * 300.00209 * 1 2 3 21 21 H 1.09003 * 109.46944 * 60.00391 * 1 2 3 22 22 H 1.09003 * 109.46692 * 60.00376 * 4 2 1 23 23 H 1.08993 * 109.47713 * 299.99864 * 4 2 1 24 24 H 1.09000 * 109.46818 * 299.99984 * 5 4 2 25 25 H 1.08996 * 109.47153 * 180.02562 * 5 4 2 26 26 H 1.08997 * 109.46978 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.46843 * 59.99954 * 6 5 4 28 28 H 0.96998 * 120.00159 * 354.18952 * 11 10 8 29 29 H 1.09001 * 109.47345 * 54.90492 * 16 7 6 30 30 H 1.08998 * 109.47068 * 174.90817 * 16 7 6 31 31 H 1.00900 * 111.00152 * 61.21963 * 17 16 7 32 32 H 1.00899 * 110.99699 * 185.16442 * 17 16 7 33 33 H 1.09000 * 109.47309 * 60.00246 * 18 2 1 34 34 H 1.08996 * 109.47374 * 300.00280 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2496 8 6 4.0708 -1.4331 2.4801 9 1 4.7000 -2.3053 2.3811 10 6 3.7260 -0.9704 3.7323 11 7 2.9342 0.0727 3.8528 12 14 4.3774 -1.8297 5.2577 13 1 3.8586 -1.1469 6.4701 14 1 3.9301 -3.2456 5.2572 15 1 5.8616 -1.7795 5.2583 16 6 4.0799 0.7202 1.2499 17 7 5.5437 0.7215 1.3732 18 6 2.0399 -0.7212 1.2493 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6766 -0.2075 -2.1392 23 1 1.6767 -1.7490 -1.2492 24 1 3.9337 0.3057 -1.2487 25 1 3.9334 -1.2353 -2.1390 26 1 5.1695 -1.4442 0.0004 27 1 3.7158 -2.4709 0.0002 28 1 2.6607 0.5677 3.0647 29 1 3.7934 1.2073 0.3178 30 1 3.6440 1.2597 2.0907 31 1 5.9726 0.2441 0.5946 32 1 5.8984 1.6621 1.4603 33 1 1.6766 -1.7489 1.2493 34 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:14 Heat of formation + Delta-G solvation = -35.180977 kcal Electronic energy + Delta-G solvation = -13791.964967 eV Core-core repulsion = 11723.090009 eV Total energy + Delta-G solvation = -2068.874957 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.56031 -35.93711 -34.13332 -32.76819 -30.76050 -27.40744 -26.38875 -25.30609 -22.72711 -21.72177 -19.43747 -18.81986 -16.68606 -15.88554 -15.70134 -15.48864 -15.33467 -14.83506 -14.34741 -14.16570 -13.39107 -13.12339 -12.89663 -12.80816 -12.51598 -12.45109 -12.02955 -11.86119 -11.76872 -11.49188 -11.45473 -11.12251 -10.59709 -10.30639 -9.98770 -9.07376 -8.14315 -5.96033 1.56337 1.64360 1.81093 2.70396 3.46466 3.90949 4.01295 4.02992 4.14258 4.38062 4.48915 4.65283 4.65505 4.71622 4.82748 4.90463 4.92102 5.01608 5.07757 5.11647 5.19851 5.25354 5.40798 5.41944 5.51279 5.65300 5.84466 5.91211 6.35184 6.50933 6.71072 6.90253 7.01349 7.76430 9.11054 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038154 B = 0.014170 C = 0.012352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.688727 B = 1975.596798 C = 2266.215778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.056 0.944 4 C -0.103 4.103 5 C -0.115 4.115 6 C -0.094 4.094 7 C 0.052 3.948 8 C -0.558 4.558 9 H 0.024 0.976 10 C -0.017 4.017 11 N -0.954 5.954 12 Si 1.097 2.903 13 H -0.291 1.291 14 H -0.281 1.281 15 H -0.283 1.283 16 C 0.080 3.920 17 N -0.837 5.837 18 C -0.103 4.103 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.273 0.727 29 H 0.013 0.987 30 H 0.040 0.960 31 H 0.334 0.666 32 H 0.330 0.670 33 H 0.025 0.975 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 0.572 -9.814 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.074 0.926 4 C -0.140 4.140 5 C -0.153 4.153 6 C -0.132 4.132 7 C 0.052 3.948 8 C -0.597 4.597 9 H 0.043 0.957 10 C -0.215 4.215 11 N -0.598 5.598 12 Si 0.923 3.077 13 H -0.217 1.217 14 H -0.207 1.207 15 H -0.209 1.209 16 C -0.051 4.051 17 N -0.366 5.366 18 C -0.142 4.142 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.044 0.956 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.065 0.139 -7.500 7.577 hybrid contribution 0.162 0.508 -2.045 2.114 sum -0.903 0.648 -9.545 9.610 Atomic orbital electron populations 1.21777 0.94868 1.01535 1.01490 1.21208 0.95768 0.98895 0.95387 0.92559 1.21507 0.95296 1.00204 0.97006 1.21586 0.96095 1.00250 0.97344 1.21412 0.98922 0.98120 0.94725 1.18313 0.91353 0.91887 0.93269 1.21936 1.32032 1.12638 0.93088 0.95720 1.26419 0.94775 0.97055 1.03239 1.70929 1.34202 1.20115 1.34511 0.83184 0.75865 0.74937 0.73689 1.21723 1.20732 1.20904 1.21877 0.88010 0.98779 0.96460 1.58403 1.06124 1.21220 1.50862 1.21697 0.97858 0.97902 0.96776 0.93029 0.93983 0.91017 0.90540 0.92674 0.92541 0.91047 0.93565 0.94585 0.91096 0.96876 0.94135 0.85303 0.85855 0.95642 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.19 71.98 0.66 -3.62 16 2 C -0.09 -3.35 2.45 -10.80 -0.03 -3.38 16 3 H 0.06 2.05 6.55 -2.39 -0.02 2.04 16 4 C -0.10 -3.13 5.20 30.60 0.16 -2.97 16 5 C -0.12 -3.66 5.65 30.60 0.17 -3.48 16 6 C -0.09 -3.78 4.44 30.59 0.14 -3.64 16 7 C 0.05 2.47 0.32 -52.94 -0.02 2.45 16 8 C -0.56 -31.10 7.47 25.60 0.19 -30.91 16 9 H 0.02 1.41 7.74 -2.91 -0.02 1.39 16 10 C -0.02 -0.98 5.15 84.66 0.44 -0.55 16 11 N -0.95 -57.25 12.43 21.45 0.27 -56.98 16 12 Si 1.10 52.94 29.90 68.60 2.05 54.99 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 C 0.08 3.58 4.72 86.30 0.41 3.99 16 17 N -0.84 -34.75 9.00 -186.72 -1.68 -36.43 16 18 C -0.10 -4.75 3.70 30.58 0.11 -4.64 16 19 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 20 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.77 6.32 -2.39 -0.02 1.75 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.85 6.80 -2.39 -0.02 1.83 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.27 16.00 3.21 -92.71 -0.30 15.70 16 29 H 0.01 0.54 4.83 -2.39 -0.01 0.53 16 30 H 0.04 2.11 5.39 -2.39 -0.01 2.10 16 31 H 0.33 12.47 7.44 -89.69 -0.67 11.80 16 32 H 0.33 11.97 9.08 -89.69 -0.81 11.16 16 33 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 2.37 5.17 -2.39 -0.01 2.35 16 Total: -1.00 -62.77 248.59 2.95 -59.82 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.08 Total: 25.34 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 2.23 Total: -46.74 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -1.41 Total: -93.41 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 2.05 Total: 54.99 kcal Total: -62.77 2.95 -59.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.639 kcal (2) G-P(sol) polarization free energy of solvation -62.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds