Wall clock time and date at job start Thu Apr 9 2020 14:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50321 * 2 1 4 4 C 1.53030 * 109.50433 * 120.08071 * 2 1 3 5 5 N 1.46848 * 109.52413 * 179.11770 * 4 2 1 6 6 C 1.46906 * 111.00092 * 174.16077 * 5 4 2 7 7 C 1.46845 * 111.19945 * 298.25735 * 5 4 2 8 8 C 1.53037 * 109.52345 * 61.74131 * 7 5 4 9 9 H 1.08998 * 109.50501 * 60.75957 * 8 7 5 10 10 C 1.52998 * 109.53596 * 180.86242 * 8 7 5 11 11 C 1.53120 * 109.50162 * 239.88380 * 2 1 3 12 12 H 1.09004 * 109.51876 * 302.30753 * 11 2 1 13 13 C 1.50695 * 109.52364 * 62.49855 * 11 2 1 14 14 H 1.07997 * 120.00317 * 55.62548 * 13 11 2 15 15 C 1.37883 * 119.99937 * 235.62286 * 13 11 2 16 16 N 1.31509 * 120.00040 * 5.66295 * 15 13 11 17 17 Si 1.86807 * 119.99728 * 185.65679 * 15 13 11 18 18 H 1.48493 * 109.47107 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46920 * 120.00171 * 17 15 13 20 20 H 1.48502 * 109.46932 * 240.00025 * 17 15 13 21 21 H 1.09006 * 109.47331 * 299.91931 * 1 2 3 22 22 H 1.09003 * 109.47195 * 59.91872 * 1 2 3 23 23 H 1.09001 * 109.47608 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46507 * 59.09768 * 4 2 1 25 25 H 1.09002 * 109.45351 * 299.13097 * 4 2 1 26 26 H 1.08995 * 109.47080 * 59.99557 * 6 5 4 27 27 H 1.08995 * 109.47000 * 180.02562 * 6 5 4 28 28 H 1.09008 * 109.46542 * 300.00080 * 6 5 4 29 29 H 1.08994 * 109.46470 * 181.75871 * 7 5 4 30 30 H 1.09008 * 109.46167 * 301.72662 * 7 5 4 31 31 H 1.08998 * 109.47168 * 185.53052 * 10 8 7 32 32 H 1.08997 * 109.46695 * 305.52893 * 10 8 7 33 33 H 1.08996 * 109.47337 * 65.53115 * 10 8 7 34 34 H 0.97000 * 119.99767 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7230 1.2482 5 7 3.5092 -0.7417 1.2380 6 6 4.0373 -1.3051 2.4878 7 6 4.0229 -1.4730 0.0728 8 6 3.5711 -0.7724 -1.2106 9 1 3.9677 0.2427 -1.2300 10 6 4.0881 -1.5461 -2.4250 11 6 2.0411 -0.7242 -1.2485 12 1 1.6451 -1.7396 -1.2683 13 6 1.5910 0.0175 -2.4807 14 1 1.8322 1.0634 -2.5996 15 6 0.8713 -0.6393 -3.4563 16 7 0.4817 -1.8804 -3.2627 17 14 0.4496 0.2339 -5.0529 18 1 0.9997 1.6128 -5.0233 19 1 1.0401 -0.5097 -6.1946 20 1 -1.0259 0.2923 -5.2104 21 1 -0.3634 0.5126 0.8907 22 1 -0.3634 0.5151 -0.8893 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6647 -1.7460 1.2550 25 1 1.6905 -0.2014 2.1389 26 1 3.6755 -2.3263 2.6073 27 1 5.1267 -1.3068 2.4538 28 1 3.7012 -0.6997 3.3297 29 1 5.1119 -1.4963 0.1098 30 1 3.6373 -2.4926 0.0850 31 1 3.8506 -0.9951 -3.3350 32 1 5.1683 -1.6677 -2.3454 33 1 3.6137 -2.5268 -2.4600 34 1 -0.0243 -2.3425 -3.9492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:17 Heat of formation + Delta-G solvation = -19.485331 kcal Electronic energy + Delta-G solvation = -13506.195109 eV Core-core repulsion = 11438.000766 eV Total energy + Delta-G solvation = -2068.194343 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.50289 -34.30179 -32.39137 -31.70754 -26.84651 -26.22692 -25.73202 -23.47004 -21.11202 -19.70736 -18.50379 -16.40394 -14.83568 -14.65780 -14.31182 -13.78491 -13.54995 -13.04428 -12.16909 -11.98512 -11.78014 -11.67365 -11.37666 -11.22716 -10.96659 -10.88460 -10.80524 -10.22388 -10.20613 -9.96529 -9.68598 -9.13727 -8.76464 -8.61956 -8.32815 -7.73222 -5.94845 -3.93562 3.31541 3.40748 3.44981 4.48379 4.55546 5.33738 5.53694 5.67451 5.75599 5.96107 6.05389 6.10287 6.10804 6.29482 6.35992 6.44082 6.53110 6.62194 6.66319 6.78851 6.82110 7.19056 7.31317 7.34728 7.37201 7.43231 7.62459 7.77644 7.87411 7.92607 8.05803 8.56110 9.16826 9.66983 11.14118 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.012275 C = 0.010621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.473153 B = 2280.527209 C = 2635.561311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.062 3.938 5 N -0.544 5.544 6 C 0.027 3.973 7 C 0.062 3.938 8 C -0.079 4.079 9 H 0.056 0.944 10 C -0.121 4.121 11 C 0.040 3.960 12 H 0.065 0.935 13 C -0.496 4.496 14 H 0.051 0.949 15 C 0.068 3.932 16 N -0.893 5.893 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 H 0.023 0.977 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.024 0.976 25 H 0.055 0.945 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.022 0.978 33 H 0.046 0.954 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 0.359 6.497 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.066 4.066 5 N -0.268 5.268 6 C -0.122 4.122 7 C -0.066 4.066 8 C -0.098 4.098 9 H 0.074 0.926 10 C -0.179 4.179 11 C 0.021 3.979 12 H 0.083 0.917 13 C -0.535 4.535 14 H 0.069 0.931 15 C -0.133 4.133 16 N -0.532 5.532 17 Si 0.708 3.292 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.070 0.690 6.376 7.596 hybrid contribution -0.533 -0.481 -0.813 1.084 sum 3.537 0.209 5.564 6.596 Atomic orbital electron populations 1.21537 0.95851 1.00796 0.99778 1.21269 0.94801 0.99231 0.94506 0.92572 1.22248 0.86229 0.98733 0.99380 1.61918 1.09044 1.53906 1.01891 1.22314 0.99918 0.97098 0.92882 1.22253 0.97927 0.95055 0.91364 1.21297 1.00110 0.97661 0.90776 0.92569 1.21518 0.96663 1.00458 0.99221 1.19075 0.89015 0.98438 0.91359 0.91719 1.21025 1.33300 0.96240 1.02885 0.93115 1.24906 0.95518 0.94853 0.98054 1.69915 1.38350 1.11095 1.33791 0.86739 0.77976 0.80045 0.84474 1.19785 1.21145 1.21248 0.95819 0.91555 0.93781 0.95732 0.92643 0.96433 0.92120 0.92112 0.92648 0.95756 0.91963 0.95844 0.93509 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.98 37.16 0.33 -2.24 16 2 C -0.08 -1.71 2.37 -90.54 -0.21 -1.93 16 3 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.06 1.19 4.75 -3.84 -0.02 1.17 16 5 N -0.54 -10.03 4.91 -242.96 -1.19 -11.22 16 6 C 0.03 0.39 9.59 60.07 0.58 0.97 16 7 C 0.06 1.19 4.75 -3.84 -0.02 1.17 16 8 C -0.08 -1.72 2.37 -90.54 -0.21 -1.94 16 9 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 10 C -0.12 -2.56 8.88 37.16 0.33 -2.23 16 11 C 0.04 0.97 1.51 -91.65 -0.14 0.83 16 12 H 0.06 1.77 6.93 -51.93 -0.36 1.41 16 13 C -0.50 -13.13 6.15 -34.44 -0.21 -13.34 16 14 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 15 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 16 N -0.89 -25.17 12.62 55.43 0.70 -24.47 16 17 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.07 1.52 7.31 -51.93 -0.38 1.14 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 1.41 7.50 -51.93 -0.39 1.02 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 266.80 15.07 4.02 4.02 Total: -1.00 -27.27 266.80 -7.33 -34.60 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.16 Total: -3.20 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 0.33 Total: -15.81 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.49 Total: -35.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.27 -7.33 -34.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.119 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds