Wall clock time and date at job start Thu Apr 9 2020 14:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50321 * 2 1 4 4 C 1.53030 * 109.50433 * 120.08071 * 2 1 3 5 5 N 1.46848 * 109.52413 * 179.11770 * 4 2 1 6 6 C 1.46906 * 111.00092 * 174.16077 * 5 4 2 7 7 C 1.46845 * 111.19945 * 298.25735 * 5 4 2 8 8 C 1.53037 * 109.52345 * 61.74131 * 7 5 4 9 9 H 1.08998 * 109.50501 * 60.75957 * 8 7 5 10 10 C 1.52998 * 109.53596 * 180.86242 * 8 7 5 11 11 C 1.53120 * 109.50162 * 239.88380 * 2 1 3 12 12 H 1.09004 * 109.51876 * 302.30753 * 11 2 1 13 13 C 1.50695 * 109.52364 * 62.49855 * 11 2 1 14 14 H 1.07997 * 120.00317 * 55.62548 * 13 11 2 15 15 C 1.37883 * 119.99937 * 235.62286 * 13 11 2 16 16 N 1.31509 * 120.00040 * 5.66295 * 15 13 11 17 17 Si 1.86807 * 119.99728 * 185.65679 * 15 13 11 18 18 H 1.48493 * 109.47107 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46920 * 120.00171 * 17 15 13 20 20 H 1.48502 * 109.46932 * 240.00025 * 17 15 13 21 21 H 1.09006 * 109.47331 * 299.91931 * 1 2 3 22 22 H 1.09003 * 109.47195 * 59.91872 * 1 2 3 23 23 H 1.09001 * 109.47608 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46507 * 59.09768 * 4 2 1 25 25 H 1.09002 * 109.45351 * 299.13097 * 4 2 1 26 26 H 1.08995 * 109.47080 * 59.99557 * 6 5 4 27 27 H 1.08995 * 109.47000 * 180.02562 * 6 5 4 28 28 H 1.09008 * 109.46542 * 300.00080 * 6 5 4 29 29 H 1.08994 * 109.46470 * 181.75871 * 7 5 4 30 30 H 1.09008 * 109.46167 * 301.72662 * 7 5 4 31 31 H 1.08998 * 109.47168 * 185.53052 * 10 8 7 32 32 H 1.08997 * 109.46695 * 305.52893 * 10 8 7 33 33 H 1.08996 * 109.47337 * 65.53115 * 10 8 7 34 34 H 0.97000 * 119.99767 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7230 1.2482 5 7 3.5092 -0.7417 1.2380 6 6 4.0373 -1.3051 2.4878 7 6 4.0229 -1.4730 0.0728 8 6 3.5711 -0.7724 -1.2106 9 1 3.9677 0.2427 -1.2300 10 6 4.0881 -1.5461 -2.4250 11 6 2.0411 -0.7242 -1.2485 12 1 1.6451 -1.7396 -1.2683 13 6 1.5910 0.0175 -2.4807 14 1 1.8322 1.0634 -2.5996 15 6 0.8713 -0.6393 -3.4563 16 7 0.4817 -1.8804 -3.2627 17 14 0.4496 0.2339 -5.0529 18 1 0.9997 1.6128 -5.0233 19 1 1.0401 -0.5097 -6.1946 20 1 -1.0259 0.2923 -5.2104 21 1 -0.3634 0.5126 0.8907 22 1 -0.3634 0.5151 -0.8893 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6647 -1.7460 1.2550 25 1 1.6905 -0.2014 2.1389 26 1 3.6755 -2.3263 2.6073 27 1 5.1267 -1.3068 2.4538 28 1 3.7012 -0.6997 3.3297 29 1 5.1119 -1.4963 0.1098 30 1 3.6373 -2.4926 0.0850 31 1 3.8506 -0.9951 -3.3350 32 1 5.1683 -1.6677 -2.3454 33 1 3.6137 -2.5268 -2.4600 34 1 -0.0243 -2.3425 -3.9492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:17 Heat of formation + Delta-G solvation = -35.822379 kcal Electronic energy + Delta-G solvation = -13506.903536 eV Core-core repulsion = 11438.000766 eV Total energy + Delta-G solvation = -2068.902771 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.12665 -35.99673 -34.08822 -33.65739 -28.55268 -27.88767 -27.33339 -25.29124 -22.68496 -21.41236 -20.27580 -18.45474 -16.61325 -16.17631 -15.99009 -15.27934 -15.23103 -14.82546 -14.00239 -13.60102 -13.30911 -13.13975 -13.05457 -12.93085 -12.82505 -12.67640 -12.46344 -12.10325 -11.83594 -11.82037 -11.42845 -10.96868 -10.76189 -10.45692 -10.31605 -9.17751 -8.03291 -6.06482 1.38597 1.42953 1.52302 2.47346 3.14207 3.26376 4.13274 4.23147 4.27097 4.33227 4.66697 4.68156 4.70609 4.72783 4.83655 4.86849 4.97632 4.97761 5.03058 5.08167 5.10179 5.35394 5.55518 5.60495 5.61061 5.64956 5.76995 5.91526 6.06308 6.27958 6.34478 6.53275 7.08966 7.55882 9.05194 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.012275 C = 0.010621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.473153 B = 2280.527209 C = 2635.561311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 H 0.050 0.950 4 C 0.069 3.931 5 N -0.553 5.553 6 C 0.026 3.974 7 C 0.069 3.931 8 C -0.079 4.079 9 H 0.050 0.950 10 C -0.113 4.113 11 C 0.039 3.961 12 H 0.028 0.972 13 C -0.499 4.499 14 H 0.040 0.960 15 C 0.024 3.976 16 N -0.922 5.922 17 Si 0.933 3.067 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.028 0.972 24 H 0.013 0.987 25 H 0.080 0.920 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 0.954 7.720 9.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 H 0.068 0.932 4 C -0.059 4.059 5 N -0.277 5.277 6 C -0.122 4.122 7 C -0.059 4.059 8 C -0.098 4.098 9 H 0.068 0.932 10 C -0.170 4.170 11 C 0.020 3.980 12 H 0.046 0.954 13 C -0.537 4.537 14 H 0.059 0.941 15 C -0.174 4.174 16 N -0.563 5.563 17 Si 0.760 3.240 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.099 0.901 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.090 1.295 7.609 9.246 hybrid contribution -0.827 -0.645 -1.157 1.561 sum 4.263 0.651 6.453 7.761 Atomic orbital electron populations 1.21436 0.95687 0.99864 1.00180 1.21188 0.95046 0.98746 0.94835 0.93168 1.22115 0.87086 0.97932 0.98736 1.61917 1.08316 1.54351 1.03108 1.22417 1.00970 0.97399 0.91395 1.22121 0.99285 0.93979 0.90495 1.21207 0.98211 0.97751 0.92660 0.93158 1.21417 0.98680 0.98822 0.98122 1.18999 0.90832 0.96252 0.91889 0.95370 1.21224 1.32798 0.95791 1.03937 0.94120 1.25484 0.95785 0.95424 1.00662 1.70035 1.39369 1.12310 1.34551 0.85891 0.77632 0.79201 0.81280 1.19335 1.20962 1.21102 0.92422 0.94070 0.95293 0.96832 0.90132 0.96141 0.90326 0.90294 0.90128 0.96865 0.94185 0.92413 0.95429 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 8.98 71.98 0.65 -4.13 16 2 C -0.08 -3.39 2.37 -10.74 -0.03 -3.41 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.07 2.52 4.75 86.32 0.41 2.93 16 5 N -0.55 -18.92 4.91 -922.59 -4.53 -23.45 16 6 C 0.03 0.67 9.59 127.69 1.22 1.89 16 7 C 0.07 2.52 4.75 86.33 0.41 2.93 16 8 C -0.08 -3.40 2.37 -10.74 -0.03 -3.42 16 9 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 10 C -0.11 -4.75 8.88 71.98 0.64 -4.11 16 11 C 0.04 1.92 1.51 -11.46 -0.02 1.90 16 12 H 0.03 1.58 6.93 -2.39 -0.02 1.57 16 13 C -0.50 -26.87 6.15 25.60 0.16 -26.71 16 14 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 15 C 0.02 1.35 5.45 84.66 0.46 1.81 16 16 N -0.92 -53.35 12.62 21.45 0.27 -53.08 16 17 Si 0.93 43.84 29.54 68.60 2.03 45.86 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 22 H 0.04 1.89 7.31 -2.39 -0.02 1.88 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 26 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 30 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.04 1.82 7.50 -2.39 -0.02 1.80 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -58.56 266.80 2.67 -55.89 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.02 Total: 5.09 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.88 Total: -30.31 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -4.26 Total: -76.53 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.56 2.67 -55.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.066 kcal (2) G-P(sol) polarization free energy of solvation -58.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds