Wall clock time and date at job start Thu Apr 9 2020 14:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 H 1.08998 * 109.50078 * 304.93398 * 3 2 1 5 5 C 1.53111 * 109.51079 * 184.87118 * 3 2 1 6 6 C 1.53039 * 109.50052 * 178.68459 * 5 3 2 7 7 C 1.53190 * 109.34109 * 61.35174 * 6 5 3 8 8 H 1.09006 * 109.59052 * 185.56171 * 7 6 5 9 9 C 1.52994 * 109.59268 * 65.13316 * 7 6 5 10 10 N 1.46931 * 108.77526 * 305.34420 * 7 6 5 11 11 C 1.36931 * 120.63728 * 233.63433 * 10 7 6 12 12 H 1.08006 * 119.99604 * 27.72084 * 11 10 7 13 13 C 1.38811 * 120.00131 * 207.72666 * 11 10 7 14 14 N 1.31609 * 119.99982 * 17.36188 * 13 11 10 15 15 Si 1.86796 * 119.99742 * 197.36560 * 13 11 10 16 16 H 1.48500 * 109.47411 * 90.00051 * 15 13 11 17 17 H 1.48500 * 109.47275 * 209.99861 * 15 13 11 18 18 H 1.48499 * 109.47434 * 329.99849 * 15 13 11 19 19 C 1.46933 * 118.73551 * 53.60680 * 10 7 6 20 20 H 1.08996 * 109.46846 * 59.99689 * 1 2 3 21 21 H 1.08992 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46888 * 300.00297 * 1 2 3 23 23 H 1.08995 * 109.46998 * 240.00076 * 2 1 3 24 24 H 1.09002 * 109.47472 * 119.99690 * 2 1 3 25 25 H 1.08996 * 109.50399 * 58.66035 * 5 3 2 26 26 H 1.08999 * 109.45040 * 298.67513 * 5 3 2 27 27 H 1.08998 * 109.49946 * 301.38014 * 6 5 3 28 28 H 1.09003 * 109.49914 * 181.31279 * 6 5 3 29 29 H 1.09001 * 109.46910 * 60.00120 * 9 7 6 30 30 H 1.08993 * 109.47705 * 180.02562 * 9 7 6 31 31 H 1.09005 * 109.46898 * 300.00854 * 9 7 6 32 32 H 0.97007 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.09006 * 109.58234 * 66.18221 * 19 10 7 34 34 H 1.08993 * 109.58821 * 186.46210 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 3.5662 1.4454 -0.1225 6 6 4.0733 2.8889 -0.1555 7 6 3.6915 3.5908 1.1515 8 1 3.9629 4.6449 1.0931 9 6 4.4268 2.9330 2.3208 10 7 2.2409 3.4660 1.3490 11 6 1.4682 4.5754 1.5660 12 1 1.7749 5.5328 1.1711 13 6 0.2907 4.4697 2.2935 14 7 0.0801 3.4174 3.0553 15 14 -0.9949 5.8211 2.1911 16 1 -1.9418 5.5209 1.0872 17 1 -1.7383 5.8954 3.4744 18 1 -0.3267 7.1213 1.9302 19 6 1.6350 2.1280 1.3088 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8584 0.9368 -1.0412 26 1 3.9999 0.9276 0.7329 27 1 3.6207 3.4145 -0.9964 28 1 5.1577 2.8912 -0.2662 29 1 5.5026 3.0157 2.1661 30 1 4.1535 3.4335 3.2497 31 1 4.1480 1.8809 2.3796 32 1 -0.7426 3.3438 3.5640 33 1 1.9913 1.5400 2.1547 34 1 0.5498 2.2167 1.3567 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306213143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:42 Heat of formation + Delta-G solvation = -5.833535 kcal Electronic energy + Delta-G solvation = -13557.680835 eV Core-core repulsion = 11490.078479 eV Total energy + Delta-G solvation = -2067.602357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.17138 -34.10301 -32.89668 -29.98474 -29.19060 -26.55219 -24.60461 -22.79093 -21.83949 -19.85212 -18.12421 -16.65551 -14.98856 -14.21029 -13.94748 -13.78881 -13.45916 -12.85827 -12.39308 -12.24107 -12.10848 -11.65720 -11.29831 -11.16652 -10.87874 -10.73134 -10.58719 -10.28698 -10.17769 -9.97109 -9.91737 -9.57591 -9.27436 -9.10661 -8.37781 -6.57965 -5.71793 -3.13274 3.41095 3.48040 3.48988 4.54255 5.33112 5.41111 5.57258 5.63769 5.69326 5.81962 5.89871 6.08675 6.19526 6.31827 6.33605 6.39112 6.45664 6.50895 6.61588 6.68815 6.75911 6.78816 6.80649 6.92052 7.08050 7.11145 7.28178 7.54679 7.79986 7.87360 8.53622 9.29665 9.93943 10.51423 11.35864 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.014917 C = 0.011385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.931037 B = 1876.592468 C = 2458.740661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.115 4.115 4 H 0.060 0.940 5 C -0.105 4.105 6 C -0.127 4.127 7 C 0.164 3.836 8 H 0.057 0.943 9 C -0.159 4.159 10 N -0.587 5.587 11 C -0.249 4.249 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.902 5.902 15 Si 0.899 3.101 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.280 1.280 19 C 0.178 3.822 20 H 0.048 0.952 21 H 0.041 0.959 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.252 0.748 33 H 0.015 0.985 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 -4.498 -5.065 7.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.135 4.135 4 H 0.078 0.922 5 C -0.142 4.142 6 C -0.166 4.166 7 C 0.057 3.943 8 H 0.076 0.924 9 C -0.218 4.218 10 N -0.308 5.308 11 C -0.378 4.378 12 H 0.082 0.918 13 C -0.196 4.196 14 N -0.546 5.546 15 Si 0.729 3.271 16 H -0.215 1.215 17 H -0.219 1.219 18 H -0.205 1.205 19 C 0.053 3.947 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.097 -4.498 -4.941 7.838 hybrid contribution -0.697 0.614 0.036 0.929 sum 3.400 -3.885 -4.905 7.121 Atomic orbital electron populations 1.21789 0.96251 1.00282 1.02557 1.21468 0.95772 0.97281 1.00409 1.21881 0.94588 0.94853 1.02164 0.92187 1.21485 0.96478 0.96481 0.99793 1.21971 0.98418 0.96497 0.99753 1.20509 0.85619 0.96874 0.91321 0.92427 1.22248 0.97645 1.01314 1.00589 1.44141 1.00254 1.03416 1.82985 1.19201 1.02733 0.88992 1.26910 0.91834 1.25004 1.00452 0.97635 0.96551 1.70044 1.25735 1.30019 1.28834 0.86332 0.82037 0.81766 0.76917 1.21529 1.21854 1.20510 1.20833 0.99705 0.84061 0.90116 0.93333 0.93963 0.91500 0.93495 0.92659 0.94109 0.92667 0.92678 0.93453 0.94714 0.93029 0.93286 0.93782 0.96712 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.67 37.16 0.36 -2.16 16 2 C -0.11 -1.88 5.41 -26.73 -0.14 -2.02 16 3 C -0.11 -2.26 2.34 -90.46 -0.21 -2.47 16 4 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 5 C -0.10 -1.87 4.97 -26.65 -0.13 -2.00 16 6 C -0.13 -2.34 5.55 -26.61 -0.15 -2.49 16 7 C 0.16 3.53 3.29 -67.60 -0.22 3.31 16 8 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 9 C -0.16 -3.16 9.02 37.15 0.34 -2.83 16 10 N -0.59 -14.88 2.70 -164.77 -0.45 -15.33 16 11 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 12 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 13 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 14 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 15 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 C 0.18 4.29 3.79 -3.71 -0.01 4.28 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.27 6.70 -51.93 -0.35 0.92 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.98 6.51 -51.93 -0.34 0.64 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.99 5.72 -51.93 -0.30 0.69 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.01 0.38 7.48 -51.93 -0.39 -0.01 16 34 H 0.09 2.38 4.75 -51.93 -0.25 2.13 16 LS Contribution 260.04 15.07 3.92 3.92 Total: -1.00 -28.69 260.04 -7.15 -35.84 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.81 Total: -2.23 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.41 Total: -13.47 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.18 Total: -41.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.69 -7.15 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.008 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds