Wall clock time and date at job start Thu Apr 9 2020 14:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 H 1.08998 * 109.50078 * 304.93398 * 3 2 1 5 5 C 1.53111 * 109.51079 * 184.87118 * 3 2 1 6 6 C 1.53039 * 109.50052 * 178.68459 * 5 3 2 7 7 C 1.53190 * 109.34109 * 61.35174 * 6 5 3 8 8 H 1.09006 * 109.59052 * 185.56171 * 7 6 5 9 9 C 1.52994 * 109.59268 * 65.13316 * 7 6 5 10 10 N 1.46931 * 108.77526 * 305.34420 * 7 6 5 11 11 C 1.36931 * 120.63728 * 233.63433 * 10 7 6 12 12 H 1.08006 * 119.99604 * 27.72084 * 11 10 7 13 13 C 1.38811 * 120.00131 * 207.72666 * 11 10 7 14 14 N 1.31609 * 119.99982 * 17.36188 * 13 11 10 15 15 Si 1.86796 * 119.99742 * 197.36560 * 13 11 10 16 16 H 1.48500 * 109.47411 * 90.00051 * 15 13 11 17 17 H 1.48500 * 109.47275 * 209.99861 * 15 13 11 18 18 H 1.48499 * 109.47434 * 329.99849 * 15 13 11 19 19 C 1.46933 * 118.73551 * 53.60680 * 10 7 6 20 20 H 1.08996 * 109.46846 * 59.99689 * 1 2 3 21 21 H 1.08992 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46888 * 300.00297 * 1 2 3 23 23 H 1.08995 * 109.46998 * 240.00076 * 2 1 3 24 24 H 1.09002 * 109.47472 * 119.99690 * 2 1 3 25 25 H 1.08996 * 109.50399 * 58.66035 * 5 3 2 26 26 H 1.08999 * 109.45040 * 298.67513 * 5 3 2 27 27 H 1.08998 * 109.49946 * 301.38014 * 6 5 3 28 28 H 1.09003 * 109.49914 * 181.31279 * 6 5 3 29 29 H 1.09001 * 109.46910 * 60.00120 * 9 7 6 30 30 H 1.08993 * 109.47705 * 180.02562 * 9 7 6 31 31 H 1.09005 * 109.46898 * 300.00854 * 9 7 6 32 32 H 0.97007 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.09006 * 109.58234 * 66.18221 * 19 10 7 34 34 H 1.08993 * 109.58821 * 186.46210 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 3.5662 1.4454 -0.1225 6 6 4.0733 2.8889 -0.1555 7 6 3.6915 3.5908 1.1515 8 1 3.9629 4.6449 1.0931 9 6 4.4268 2.9330 2.3208 10 7 2.2409 3.4660 1.3490 11 6 1.4682 4.5754 1.5660 12 1 1.7749 5.5328 1.1711 13 6 0.2907 4.4697 2.2935 14 7 0.0801 3.4174 3.0553 15 14 -0.9949 5.8211 2.1911 16 1 -1.9418 5.5209 1.0872 17 1 -1.7383 5.8954 3.4744 18 1 -0.3267 7.1213 1.9302 19 6 1.6350 2.1280 1.3088 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8584 0.9368 -1.0412 26 1 3.9999 0.9276 0.7329 27 1 3.6207 3.4145 -0.9964 28 1 5.1577 2.8912 -0.2662 29 1 5.5026 3.0157 2.1661 30 1 4.1535 3.4335 3.2497 31 1 4.1480 1.8809 2.3796 32 1 -0.7426 3.3438 3.5640 33 1 1.9913 1.5400 2.1547 34 1 0.5498 2.2167 1.3567 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306213143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:42 Heat of formation + Delta-G solvation = -21.673320 kcal Electronic energy + Delta-G solvation = -13558.367700 eV Core-core repulsion = 11490.078479 eV Total energy + Delta-G solvation = -2068.289221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84744 -35.74102 -34.76478 -31.84340 -30.79171 -28.29359 -26.43616 -24.47727 -23.50048 -21.39667 -19.87509 -18.60431 -16.90546 -16.01314 -15.63205 -15.42259 -15.00805 -14.43525 -14.11701 -14.00275 -13.68601 -13.17865 -12.99742 -12.85125 -12.64468 -12.62383 -12.17727 -12.06295 -11.89784 -11.71282 -11.50331 -11.21391 -10.87046 -10.83545 -10.46273 -8.61375 -7.83388 -5.27835 1.44837 1.46329 1.54785 2.51691 3.28804 3.69238 3.98647 4.16009 4.20841 4.36392 4.42319 4.61180 4.67455 4.78915 4.84198 4.88065 4.92276 5.05030 5.11923 5.21581 5.23665 5.25824 5.29244 5.39410 5.49732 5.55394 5.63410 5.64667 5.78630 5.93118 6.44246 7.19766 7.94212 8.44869 9.21346 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.014917 C = 0.011385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.931037 B = 1876.592468 C = 2458.740661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.108 4.108 4 H 0.047 0.953 5 C -0.101 4.101 6 C -0.119 4.119 7 C 0.152 3.848 8 H 0.050 0.950 9 C -0.148 4.148 10 N -0.606 5.606 11 C -0.261 4.261 12 H 0.061 0.939 13 C -0.049 4.049 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.286 1.286 17 H -0.295 1.295 18 H -0.270 1.270 19 C 0.189 3.811 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.022 0.978 31 H 0.044 0.956 32 H 0.248 0.752 33 H -0.011 1.011 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -5.120 -6.601 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.128 4.128 4 H 0.066 0.934 5 C -0.138 4.138 6 C -0.158 4.158 7 C 0.045 3.955 8 H 0.068 0.932 9 C -0.207 4.207 10 N -0.328 5.328 11 C -0.391 4.391 12 H 0.079 0.921 13 C -0.244 4.244 14 N -0.577 5.577 15 Si 0.790 3.210 16 H -0.213 1.213 17 H -0.222 1.222 18 H -0.195 1.195 19 C 0.064 3.936 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.007 0.993 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.309 -5.118 -6.495 9.827 hybrid contribution -1.018 0.820 0.524 1.409 sum 4.291 -4.298 -5.971 8.517 Atomic orbital electron populations 1.21753 0.96446 1.01508 1.00925 1.21448 0.95612 0.95491 1.01878 1.21742 0.96502 0.95969 0.98612 0.93406 1.21478 0.94438 0.96410 1.01522 1.21881 1.00497 0.96293 0.97147 1.20780 0.83651 0.97307 0.93719 0.93212 1.22114 0.99794 1.00281 0.98502 1.44426 1.02062 1.03142 1.83180 1.19498 1.03458 0.89821 1.26363 0.92109 1.25712 1.02251 0.99862 0.96615 1.70196 1.25906 1.31824 1.29824 0.85354 0.79517 0.79652 0.76495 1.21308 1.22157 1.19477 1.20601 0.97524 0.83779 0.91711 0.93170 0.91288 0.94919 0.90310 0.92667 0.90805 0.92433 0.93307 0.90042 0.90901 0.95888 0.93740 0.94301 0.99329 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.67 71.98 0.70 -4.14 16 2 C -0.11 -3.37 5.41 30.60 0.17 -3.21 16 3 C -0.11 -4.13 2.34 -10.69 -0.02 -4.15 16 4 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 5 C -0.10 -3.28 4.97 30.64 0.15 -3.12 16 6 C -0.12 -4.04 5.55 30.67 0.17 -3.87 16 7 C 0.15 6.39 3.29 44.97 0.15 6.54 16 8 H 0.05 2.13 7.93 -2.38 -0.02 2.11 16 9 C -0.15 -5.73 9.02 71.98 0.65 -5.08 16 10 N -0.61 -31.19 2.70 -675.21 -1.82 -33.02 16 11 C -0.26 -14.82 9.58 84.03 0.81 -14.02 16 12 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 13 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 14 N -0.93 -56.25 11.19 21.65 0.24 -56.00 16 15 Si 0.96 46.07 29.59 68.60 2.03 48.10 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 17 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.19 9.31 3.79 86.36 0.33 9.63 16 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.03 1.26 6.70 -2.39 -0.02 1.25 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.86 6.51 -2.39 -0.02 1.85 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 1.74 5.72 -2.38 -0.01 1.73 16 32 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 33 H -0.01 -0.60 7.48 -2.38 -0.02 -0.62 16 34 H 0.05 3.03 4.75 -2.39 -0.01 3.02 16 Total: -1.00 -63.10 260.04 4.99 -58.11 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.04 Total: 6.62 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.51 Total: -23.81 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.58 Total: -89.02 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -63.10 4.99 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.436 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds