Wall clock time and date at job start Thu Apr 9 2020 14:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47131 * 2 1 4 4 C 1.50696 * 109.46822 * 240.00154 * 2 1 3 5 5 H 1.07997 * 120.00626 * 335.06971 * 4 2 1 6 6 C 1.37881 * 119.99808 * 155.07585 * 4 2 1 7 7 N 1.31517 * 120.00088 * 6.89535 * 6 4 2 8 8 Si 1.86799 * 120.00080 * 186.90347 * 6 4 2 9 9 H 1.48493 * 109.47318 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47042 * 299.99510 * 8 6 4 11 11 H 1.48503 * 109.47544 * 59.99297 * 8 6 4 12 12 N 1.46899 * 109.47170 * 120.00187 * 2 1 3 13 13 C 1.46905 * 110.99893 * 274.60226 * 12 2 1 14 14 H 1.09003 * 112.84873 * 2.13175 * 13 12 2 15 15 C 1.53777 * 113.61311 * 230.93430 * 13 12 2 16 16 C 1.53780 * 87.08259 * 270.88273 * 15 13 12 17 17 H 1.08991 * 113.61868 * 220.01812 * 16 15 13 18 18 C 1.53005 * 113.61366 * 89.19904 * 16 15 13 19 19 C 1.53777 * 113.61334 * 133.43572 * 13 12 2 20 20 H 1.08993 * 113.61673 * 203.66515 * 19 13 12 21 21 C 1.53009 * 113.61810 * 334.57047 * 19 13 12 22 22 H 1.08997 * 109.47408 * 184.90574 * 1 2 3 23 23 H 1.09000 * 109.47303 * 304.90948 * 1 2 3 24 24 H 1.09003 * 109.47086 * 64.90491 * 1 2 3 25 25 H 0.97003 * 119.99514 * 355.37093 * 7 6 4 26 26 H 1.00895 * 111.00078 * 150.65086 * 12 2 1 27 27 H 1.09000 * 113.61463 * 25.43542 * 15 13 12 28 28 H 1.09000 * 113.61405 * 156.25258 * 15 13 12 29 29 H 1.09005 * 109.46729 * 59.33696 * 18 16 15 30 30 H 1.08989 * 109.47269 * 179.33911 * 18 16 15 31 31 H 1.09001 * 109.47066 * 299.34473 * 18 16 15 32 32 H 1.09000 * 109.46592 * 53.28603 * 21 19 13 33 33 H 1.08995 * 109.46974 * 173.28975 * 21 19 13 34 34 H 1.08998 * 109.46705 * 293.29114 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4127 -1.4477 -1.7192 6 6 3.2830 -0.4191 -1.7324 7 7 4.0909 0.3754 -1.0647 8 14 3.8300 -1.1527 -3.3609 9 1 5.2045 -0.6877 -3.6765 10 1 3.8182 -2.6346 -3.2650 11 1 2.9020 -0.7189 -4.4360 12 7 2.0197 -0.6925 1.1994 13 6 2.0914 0.2248 2.3446 14 1 1.7374 1.2278 2.1062 15 6 3.4500 0.2060 3.0647 16 6 2.8826 -0.9252 3.9384 17 1 3.1667 -0.8506 4.9880 18 6 3.1133 -2.3221 3.3583 19 6 1.4877 -0.3530 3.6354 20 1 1.1646 0.4084 4.3453 21 6 0.4255 -1.4262 3.3885 22 1 -0.3634 -1.0238 0.0879 23 1 -0.3634 0.5881 0.8427 24 1 -0.3633 0.4359 -0.9307 25 1 3.7830 0.8097 -0.2538 26 1 2.9143 -1.1259 1.0268 27 1 4.2774 -0.1071 2.4280 28 1 3.6640 1.1209 3.6173 29 1 4.1832 -2.4945 3.2408 30 1 2.6969 -3.0692 4.0338 31 1 2.6243 -2.3975 2.3871 32 1 0.8340 -2.1984 2.7367 33 1 0.1309 -1.8712 4.3389 34 1 -0.4450 -0.9733 2.9140 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306356725.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:58 Heat of formation + Delta-G solvation = 4.028258 kcal Electronic energy + Delta-G solvation = -13447.457180 eV Core-core repulsion = 11380.282462 eV Total energy + Delta-G solvation = -2067.174717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.41729 -34.99836 -31.53769 -29.42238 -28.95453 -27.61932 -24.57214 -22.40910 -21.91971 -20.17312 -17.65532 -16.93483 -15.51294 -14.24952 -14.05199 -13.75988 -13.55908 -13.15525 -12.71327 -12.39950 -11.84455 -11.53058 -11.27461 -11.04177 -10.86302 -10.83557 -10.72511 -10.55588 -10.14525 -10.11737 -9.91845 -9.47337 -9.15473 -8.62372 -8.37876 -7.15332 -6.43172 -4.16169 3.41962 3.42937 3.62013 4.48538 4.97872 5.09124 5.16658 5.36727 5.43598 5.81901 5.93572 5.97692 6.06145 6.23194 6.27271 6.35106 6.38542 6.45061 6.51721 6.55148 6.60131 6.74092 6.78446 6.89485 7.02663 7.07678 7.20870 7.40423 7.96187 8.40146 8.55930 8.72771 8.87687 9.57259 10.94462 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041930 B = 0.011362 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.621947 B = 2463.793854 C = 2711.031495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.188 3.812 3 H 0.003 0.997 4 C -0.592 4.592 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 1.069 2.931 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.288 1.288 12 N -0.663 5.663 13 C 0.073 3.927 14 H 0.054 0.946 15 C -0.161 4.161 16 C -0.101 4.101 17 H 0.058 0.942 18 C -0.144 4.144 19 C -0.109 4.109 20 H 0.072 0.928 21 C -0.124 4.124 22 H 0.044 0.956 23 H 0.021 0.979 24 H 0.039 0.961 25 H 0.268 0.732 26 H 0.343 0.657 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -1.984 7.310 8.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.021 0.979 4 C -0.631 4.631 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.545 5.545 8 Si 0.897 3.103 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.214 1.214 12 N -0.296 5.296 13 C -0.039 4.039 14 H 0.072 0.928 15 C -0.199 4.199 16 C -0.120 4.120 17 H 0.076 0.924 18 C -0.201 4.201 19 C -0.128 4.128 20 H 0.090 0.910 21 C -0.182 4.182 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.165 0.835 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.048 -2.328 6.406 7.117 hybrid contribution -0.511 0.795 0.987 1.366 sum -2.559 -1.533 7.393 7.972 Atomic orbital electron populations 1.21657 0.98111 0.99787 0.98016 1.19340 0.91416 0.93097 0.87964 0.97895 1.22078 1.04432 1.25598 1.10977 0.92933 1.25929 0.93245 0.96249 1.03011 1.70842 1.36368 1.29108 1.18207 0.83537 0.76111 0.75811 0.74837 1.20912 1.21357 1.21430 1.61079 1.32933 1.30933 1.04680 1.22659 0.93994 0.95145 0.92067 0.92799 1.23521 0.98584 0.98257 0.99574 1.22227 0.96861 0.95151 0.97747 0.92378 1.21806 1.00883 0.94442 1.03006 1.22679 0.94387 0.97939 0.97803 0.90993 1.21508 0.97899 0.99246 0.99508 0.93656 0.95976 0.94184 0.92051 0.83523 0.91295 0.91124 0.93536 0.93528 0.89001 0.90537 0.95056 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.39 37.16 0.35 -2.25 16 2 C 0.19 4.67 2.02 -68.87 -0.14 4.53 16 3 H 0.00 0.09 6.45 -51.93 -0.34 -0.24 16 4 C -0.59 -16.21 8.28 -34.44 -0.29 -16.49 16 5 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 6 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 7 N -0.91 -26.48 13.63 55.43 0.76 -25.72 16 8 Si 1.07 24.72 29.91 -169.99 -5.08 19.64 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.66 -14.61 3.79 -100.10 -0.38 -14.99 16 13 C 0.07 1.42 4.06 -66.90 -0.27 1.15 16 14 H 0.05 1.11 7.49 -51.93 -0.39 0.73 16 15 C -0.16 -2.87 7.27 -25.92 -0.19 -3.06 16 16 C -0.10 -1.64 4.46 -89.80 -0.40 -2.04 16 17 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.14 -2.34 8.15 37.16 0.30 -2.03 16 19 C -0.11 -1.81 4.30 -89.80 -0.39 -2.20 16 20 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.12 -2.04 8.82 37.16 0.33 -1.72 16 22 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.27 7.80 6.82 -40.82 -0.28 7.52 16 26 H 0.34 8.22 6.54 -39.29 -0.26 7.97 16 27 H 0.07 1.36 7.81 -51.93 -0.41 0.95 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.67 8.14 -51.94 -0.42 0.25 16 31 H 0.09 1.69 4.19 -51.93 -0.22 1.47 16 32 H 0.08 1.36 5.44 -51.93 -0.28 1.08 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 264.81 15.07 3.99 3.99 Total: -1.00 -27.50 264.81 -7.10 -34.60 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.60 Total: 6.09 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -0.79 Total: -23.61 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.38 Total: -40.71 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.50 -7.10 -34.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306356725.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.632 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds