Wall clock time and date at job start Thu Apr 9 2020 14:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 C 1.50692 * 109.47181 * 239.99978 * 2 1 3 5 5 H 1.08007 * 119.99857 * 239.99646 * 4 2 1 6 6 C 1.37878 * 120.00061 * 60.00013 * 4 2 1 7 7 N 1.31509 * 120.00048 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47248 * 90.00231 * 8 6 4 10 10 H 1.48500 * 109.46941 * 209.99750 * 8 6 4 11 11 H 1.48498 * 109.47501 * 329.99967 * 8 6 4 12 12 N 1.46903 * 109.46755 * 119.99678 * 2 1 3 13 13 C 1.46897 * 111.00106 * 275.00127 * 12 2 1 14 14 H 1.08994 * 112.91030 * 23.75414 * 13 12 2 15 15 C 1.53784 * 113.61420 * 252.49983 * 13 12 2 16 16 C 1.53779 * 87.08045 * 220.02146 * 15 13 12 17 17 H 1.09006 * 113.61307 * 270.88660 * 16 15 13 18 18 C 1.53003 * 113.69268 * 139.99100 * 16 15 13 19 19 C 1.53779 * 87.08402 * 25.43458 * 16 15 13 20 20 H 1.09000 * 113.61527 * 89.11480 * 19 16 15 21 21 C 1.53000 * 113.61731 * 220.02348 * 19 16 15 22 22 H 1.09005 * 109.46586 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47175 * 299.99577 * 1 2 3 24 24 H 1.08997 * 109.47043 * 60.00143 * 1 2 3 25 25 H 0.97002 * 120.00321 * 179.97438 * 7 6 4 26 26 H 1.00893 * 111.00088 * 38.96181 * 12 2 1 27 27 H 1.09002 * 113.61478 * 334.57110 * 15 13 12 28 28 H 1.09004 * 113.61162 * 105.47288 * 15 13 12 29 29 H 1.08996 * 109.47144 * 322.46745 * 18 16 15 30 30 H 1.09011 * 109.46625 * 82.46186 * 18 16 15 31 31 H 1.08997 * 109.47612 * 202.46323 * 18 16 15 32 32 H 1.08994 * 109.47401 * 157.49461 * 21 19 16 33 33 H 1.09006 * 109.46633 * 277.49501 * 21 19 16 34 34 H 1.09005 * 109.47442 * 37.48787 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3450 -2.1615 -4.4123 10 1 2.4873 -0.1402 -5.1119 11 1 3.6309 -1.7566 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.4077 1.0730 2.2488 15 6 3.5152 0.6157 2.7438 16 6 3.0598 0.4913 4.2074 17 1 2.6523 1.4152 4.6178 18 6 4.1009 -0.1569 5.1222 19 6 1.9844 -0.4877 3.7074 20 1 2.3163 -1.5256 3.6829 21 6 0.6286 -0.3119 4.3942 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1613 -3.4844 26 1 1.4496 -1.4979 1.4101 27 1 4.2656 -0.1207 2.4559 28 1 3.7850 1.6316 2.4553 29 1 4.6124 -0.9542 4.5829 30 1 4.8268 0.5936 5.4355 31 1 3.6054 -0.5718 5.9999 32 1 -0.1568 -0.7190 3.7575 33 1 0.6334 -0.8399 5.3479 34 1 0.4434 0.7483 4.5668 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306356726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:59 Heat of formation + Delta-G solvation = -16.359704 kcal Electronic energy + Delta-G solvation = -12896.401735 eV Core-core repulsion = 10828.342929 eV Total energy + Delta-G solvation = -2068.058806 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47951 -36.88464 -34.02198 -31.19384 -30.49148 -28.41827 -27.23420 -23.82813 -22.90130 -21.73086 -20.32521 -18.30647 -16.75842 -16.44628 -15.70561 -15.27412 -14.88834 -14.31227 -14.06067 -13.89269 -13.75122 -13.40360 -13.08180 -12.86235 -12.75822 -12.49038 -12.37136 -12.17221 -12.04006 -11.73330 -11.58253 -11.14818 -10.81368 -10.68221 -10.49192 -8.92571 -8.09852 -6.21378 1.42203 1.42772 1.54207 2.43899 3.18065 3.65478 3.69590 3.72713 4.06090 4.20606 4.56613 4.58464 4.66104 4.69423 4.72862 4.84608 4.94506 4.98568 5.01874 5.11394 5.12454 5.18299 5.27253 5.33361 5.44174 5.63221 5.67484 5.70289 5.88803 6.29783 6.69760 6.88304 6.96695 7.49052 8.95838 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055650 B = 0.008218 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.021668 B = 3406.310527 C = 3652.467099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H -0.004 1.004 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.675 5.675 13 C 0.053 3.947 14 H 0.045 0.955 15 C -0.127 4.127 16 C -0.097 4.097 17 H 0.093 0.907 18 C -0.133 4.133 19 C -0.103 4.103 20 H 0.093 0.907 21 C -0.138 4.138 22 H 0.032 0.968 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.261 0.739 26 H 0.330 0.670 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -1.805 13.185 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.108 3.892 3 H 0.014 0.986 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.304 5.304 13 C -0.057 4.057 14 H 0.063 0.937 15 C -0.166 4.166 16 C -0.116 4.116 17 H 0.111 0.889 18 C -0.191 4.191 19 C -0.122 4.122 20 H 0.111 0.889 21 C -0.195 4.195 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.450 -1.613 12.878 13.208 hybrid contribution -0.845 0.035 -1.078 1.371 sum 1.605 -1.578 11.800 12.012 Atomic orbital electron populations 1.22236 1.00090 0.99152 0.99864 1.18936 0.89900 0.92421 0.87963 0.98635 1.21486 1.30365 1.12420 0.91190 0.92773 1.25754 0.95490 0.95887 1.01993 1.70016 1.38164 1.24338 1.23968 0.85498 0.78801 0.78224 0.78736 1.19953 1.20920 1.19541 1.60811 1.57099 1.09201 1.03308 1.23119 0.97131 0.95360 0.90119 0.93707 1.23109 0.96913 1.00299 0.96257 1.22413 0.96422 0.98763 0.93994 0.88906 1.21655 0.98007 1.00379 0.99020 1.22841 0.96230 0.99323 0.93805 0.88922 1.21710 0.95520 1.01784 1.00518 0.94915 0.95861 0.92105 0.93017 0.85259 0.90573 0.93304 0.93107 0.91986 0.91411 0.93650 0.90814 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.67 8.93 71.98 0.64 -7.02 16 2 C 0.22 11.40 2.43 44.17 0.11 11.51 16 3 H 0.00 -0.25 7.84 -2.39 -0.02 -0.27 16 4 C -0.52 -29.62 8.84 25.60 0.23 -29.39 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.38 5.30 84.66 0.45 0.82 16 7 N -0.92 -54.69 11.32 21.45 0.24 -54.45 16 8 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.67 -29.53 6.29 -470.61 -2.96 -32.49 16 13 C 0.05 1.94 3.40 45.45 0.15 2.10 16 14 H 0.04 1.78 7.45 -2.39 -0.02 1.77 16 15 C -0.13 -4.20 7.44 31.12 0.23 -3.97 16 16 C -0.10 -2.44 3.91 -10.27 -0.04 -2.48 16 17 H 0.09 2.16 7.96 -2.38 -0.02 2.14 16 18 C -0.13 -2.71 9.71 71.98 0.70 -2.01 16 19 C -0.10 -2.84 3.49 -10.27 -0.04 -2.88 16 20 H 0.09 2.56 8.10 -2.39 -0.02 2.54 16 21 C -0.14 -3.28 9.71 71.98 0.70 -2.58 16 22 H 0.03 1.54 8.13 -2.38 -0.02 1.52 16 23 H 0.02 1.02 7.74 -2.39 -0.02 1.00 16 24 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 25 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.33 13.59 8.29 -89.70 -0.74 12.85 16 27 H 0.08 2.64 7.97 -2.39 -0.02 2.63 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.09 7.95 -2.39 -0.02 1.08 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.05 1.27 7.94 -2.38 -0.02 1.25 16 Total: -1.00 -61.00 273.89 2.75 -58.26 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.30 Total: 17.63 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.13 Total: -35.90 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.72 Total: -86.94 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -61.00 2.75 -58.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306356726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.896 kcal (2) G-P(sol) polarization free energy of solvation -61.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds