Wall clock time and date at job start Thu Apr 9 2020 14:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47071 * 2 1 4 4 C 1.50702 * 109.47408 * 240.00247 * 2 1 3 5 5 H 1.07995 * 120.00038 * 245.63664 * 4 2 1 6 6 C 1.37873 * 120.00017 * 65.62703 * 4 2 1 7 7 N 1.31516 * 120.00665 * 197.49918 * 6 4 2 8 8 Si 1.86807 * 119.99846 * 17.50614 * 6 4 2 9 9 H 1.48502 * 109.47254 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47132 * 299.99610 * 8 6 4 11 11 H 1.48500 * 109.46892 * 59.99717 * 8 6 4 12 12 N 1.46901 * 109.47208 * 120.00040 * 2 1 3 13 13 C 1.46901 * 111.00301 * 275.00353 * 12 2 1 14 14 H 1.08999 * 112.84890 * 26.68576 * 13 12 2 15 15 C 1.53778 * 113.61305 * 255.49340 * 13 12 2 16 16 C 1.53774 * 87.08240 * 270.88300 * 15 13 12 17 17 H 1.09003 * 113.61493 * 89.11876 * 16 15 13 18 18 C 1.52999 * 113.61207 * 220.01892 * 16 15 13 19 19 C 1.53774 * 113.61545 * 157.99799 * 13 12 2 20 20 H 1.09005 * 113.61420 * 334.56256 * 19 13 12 21 21 C 1.53003 * 113.61431 * 203.66650 * 19 13 12 22 22 H 1.08998 * 109.47315 * 306.35479 * 1 2 3 23 23 H 1.09001 * 109.46632 * 66.35541 * 1 2 3 24 24 H 1.09003 * 109.46856 * 186.35413 * 1 2 3 25 25 H 0.97007 * 119.99299 * 354.90374 * 7 6 4 26 26 H 1.00898 * 111.00012 * 151.04502 * 12 2 1 27 27 H 1.09000 * 113.61480 * 25.43171 * 15 13 12 28 28 H 1.08997 * 113.61710 * 156.24417 * 15 13 12 29 29 H 1.09001 * 109.47439 * 40.49598 * 18 16 15 30 30 H 1.09005 * 109.46907 * 160.49423 * 18 16 15 31 31 H 1.08996 * 109.47375 * 280.48798 * 18 16 15 32 32 H 1.09002 * 109.47007 * 59.99438 * 21 19 13 33 33 H 1.08994 * 109.47578 * 180.02562 * 21 19 13 34 34 H 1.09004 * 109.46433 * 299.99773 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5762 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9165 -0.9292 -3.5506 8 14 1.3110 1.6200 -2.6501 9 1 1.1180 1.9462 -4.0859 10 1 0.0451 1.8619 -1.9126 11 1 2.3837 2.4792 -2.0876 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3470 14 1 1.3711 1.0450 2.2719 15 6 3.5102 0.6731 2.6982 16 6 3.5912 -0.5620 3.6107 17 1 3.9572 -1.4555 3.1047 18 6 4.3019 -0.2967 4.9393 19 6 2.0580 -0.4934 3.7077 20 1 1.5745 -1.4698 3.6787 21 6 1.5552 0.3864 4.8541 22 1 -0.3634 0.6092 0.8276 23 1 -0.3633 0.4122 -0.9414 24 1 -0.3633 -1.0214 0.1137 25 1 2.2405 -1.8400 -3.4692 26 1 2.9173 -1.1205 1.0287 27 1 4.1991 0.6383 1.8541 28 1 3.5492 1.6195 3.2375 29 1 4.0016 0.6779 5.3239 30 1 4.0299 -1.0702 5.6576 31 1 5.3806 -0.3091 4.7832 32 1 0.5379 0.7147 4.6409 33 1 1.5661 -0.1849 5.7822 34 1 2.2040 1.2564 4.9558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306356728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:01 Heat of formation + Delta-G solvation = 3.627697 kcal Electronic energy + Delta-G solvation = -13011.868129 eV Core-core repulsion = 10944.676042 eV Total energy + Delta-G solvation = -2067.192087 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.56862 -35.09784 -32.15735 -29.74107 -29.37115 -27.10041 -24.68527 -23.46996 -21.87034 -19.66895 -17.89794 -17.23113 -15.69409 -14.99991 -14.24030 -13.79793 -13.75169 -13.14744 -12.61631 -12.41919 -12.14692 -11.99705 -11.91662 -11.66484 -11.32962 -11.20080 -10.75499 -10.46486 -10.27433 -9.97628 -9.70217 -9.65178 -9.47309 -8.87983 -8.21878 -7.44314 -6.45891 -4.06864 3.39050 3.41922 3.60368 4.48255 4.73495 4.79745 5.01081 5.15044 5.26772 5.44484 5.58479 5.65117 5.76492 5.83979 5.90285 5.99655 6.07756 6.14791 6.18010 6.28900 6.46742 6.50681 6.68207 6.69436 6.77175 6.88792 7.01810 7.51052 7.78822 8.18026 8.40212 8.53836 8.96192 9.61897 10.94001 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054103 B = 0.008967 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.407009 B = 3121.903611 C = 3218.747244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.189 3.811 3 H -0.006 1.006 4 C -0.605 4.605 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.905 5.905 8 Si 1.047 2.953 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.662 5.662 13 C 0.075 3.925 14 H 0.073 0.927 15 C -0.169 4.169 16 C -0.109 4.109 17 H 0.086 0.914 18 C -0.139 4.139 19 C -0.108 4.108 20 H 0.078 0.922 21 C -0.129 4.129 22 H 0.017 0.983 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.268 0.732 26 H 0.338 0.662 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 3.857 14.371 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.081 3.919 3 H 0.011 0.989 4 C -0.643 4.643 5 H 0.077 0.923 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.875 3.125 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.291 5.291 13 C -0.037 4.037 14 H 0.091 0.909 15 C -0.208 4.208 16 C -0.127 4.127 17 H 0.105 0.895 18 C -0.197 4.197 19 C -0.127 4.127 20 H 0.097 0.903 21 C -0.187 4.187 22 H 0.036 0.964 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.388 4.741 13.389 14.209 hybrid contribution 1.320 -0.708 0.872 1.734 sum 1.709 4.033 14.262 14.919 Atomic orbital electron populations 1.22132 0.98375 1.00271 0.98708 1.19408 0.92035 0.92409 0.88082 0.98868 1.22093 1.40755 1.10131 0.91333 0.92273 1.25717 0.94592 1.05004 0.92070 1.70860 1.41716 1.09867 1.31511 0.84013 0.77138 0.75338 0.75973 1.21113 1.19978 1.21202 1.60408 1.32405 1.31452 1.04881 1.22680 0.94897 0.94418 0.91733 0.90865 1.23740 0.99738 0.97618 0.99747 1.22471 0.95791 0.98593 0.95869 0.89527 1.21728 0.99677 1.01226 0.97028 1.22565 0.95239 0.99882 0.95031 0.90346 1.21554 1.00666 0.99202 0.97246 0.96369 0.93013 0.93197 0.92235 0.84342 0.91732 0.90667 0.92661 0.92992 0.93276 0.92698 0.92886 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.05 37.16 0.34 -2.84 16 2 C 0.19 4.63 2.05 -68.86 -0.14 4.48 16 3 H -0.01 -0.15 6.51 -51.93 -0.34 -0.49 16 4 C -0.60 -17.18 8.83 -34.44 -0.30 -17.49 16 5 H 0.06 1.80 7.92 -52.49 -0.42 1.39 16 6 C 0.03 0.92 5.29 -17.82 -0.09 0.83 16 7 N -0.91 -28.01 13.70 55.43 0.76 -27.25 16 8 Si 1.05 25.53 26.29 -169.99 -4.47 21.06 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.27 -6.21 5.76 56.52 0.33 -5.88 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.66 -14.08 6.37 -100.10 -0.64 -14.72 16 13 C 0.07 1.31 3.58 -66.90 -0.24 1.07 16 14 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 15 C -0.17 -2.61 6.81 -25.92 -0.18 -2.79 16 16 C -0.11 -1.52 4.04 -89.81 -0.36 -1.88 16 17 H 0.09 1.28 8.01 -51.93 -0.42 0.86 16 18 C -0.14 -1.59 8.94 37.16 0.33 -1.26 16 19 C -0.11 -1.59 4.27 -89.81 -0.38 -1.97 16 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 21 C -0.13 -1.56 8.55 37.16 0.32 -1.25 16 22 H 0.02 0.36 7.78 -51.93 -0.40 -0.04 16 23 H 0.05 1.23 4.88 -51.93 -0.25 0.98 16 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 26 H 0.34 7.25 7.60 -39.29 -0.30 6.96 16 27 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 28 H 0.07 1.05 7.52 -51.93 -0.39 0.66 16 29 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.62 6.07 -51.93 -0.32 0.30 16 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -29.35 263.61 -6.83 -36.18 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.74 Total: 3.84 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.72 Total: -23.09 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.12 Total: -41.96 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.47 Total: 21.06 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.35 -6.83 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306356728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.804 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds