Wall clock time and date at job start Thu Apr 9 2020 14:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47071 * 2 1 4 4 C 1.50702 * 109.47408 * 240.00247 * 2 1 3 5 5 H 1.07995 * 120.00038 * 245.63664 * 4 2 1 6 6 C 1.37873 * 120.00017 * 65.62703 * 4 2 1 7 7 N 1.31516 * 120.00665 * 197.49918 * 6 4 2 8 8 Si 1.86807 * 119.99846 * 17.50614 * 6 4 2 9 9 H 1.48502 * 109.47254 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47132 * 299.99610 * 8 6 4 11 11 H 1.48500 * 109.46892 * 59.99717 * 8 6 4 12 12 N 1.46901 * 109.47208 * 120.00040 * 2 1 3 13 13 C 1.46901 * 111.00301 * 275.00353 * 12 2 1 14 14 H 1.08999 * 112.84890 * 26.68576 * 13 12 2 15 15 C 1.53778 * 113.61305 * 255.49340 * 13 12 2 16 16 C 1.53774 * 87.08240 * 270.88300 * 15 13 12 17 17 H 1.09003 * 113.61493 * 89.11876 * 16 15 13 18 18 C 1.52999 * 113.61207 * 220.01892 * 16 15 13 19 19 C 1.53774 * 113.61545 * 157.99799 * 13 12 2 20 20 H 1.09005 * 113.61420 * 334.56256 * 19 13 12 21 21 C 1.53003 * 113.61431 * 203.66650 * 19 13 12 22 22 H 1.08998 * 109.47315 * 306.35479 * 1 2 3 23 23 H 1.09001 * 109.46632 * 66.35541 * 1 2 3 24 24 H 1.09003 * 109.46856 * 186.35413 * 1 2 3 25 25 H 0.97007 * 119.99299 * 354.90374 * 7 6 4 26 26 H 1.00898 * 111.00012 * 151.04502 * 12 2 1 27 27 H 1.09000 * 113.61480 * 25.43171 * 15 13 12 28 28 H 1.08997 * 113.61710 * 156.24417 * 15 13 12 29 29 H 1.09001 * 109.47439 * 40.49598 * 18 16 15 30 30 H 1.09005 * 109.46907 * 160.49423 * 18 16 15 31 31 H 1.08996 * 109.47375 * 280.48798 * 18 16 15 32 32 H 1.09002 * 109.47007 * 59.99438 * 21 19 13 33 33 H 1.08994 * 109.47578 * 180.02562 * 21 19 13 34 34 H 1.09004 * 109.46433 * 299.99773 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5762 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9165 -0.9292 -3.5506 8 14 1.3110 1.6200 -2.6501 9 1 1.1180 1.9462 -4.0859 10 1 0.0451 1.8619 -1.9126 11 1 2.3837 2.4792 -2.0876 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3470 14 1 1.3711 1.0450 2.2719 15 6 3.5102 0.6731 2.6982 16 6 3.5912 -0.5620 3.6107 17 1 3.9572 -1.4555 3.1047 18 6 4.3019 -0.2967 4.9393 19 6 2.0580 -0.4934 3.7077 20 1 1.5745 -1.4698 3.6787 21 6 1.5552 0.3864 4.8541 22 1 -0.3634 0.6092 0.8276 23 1 -0.3633 0.4122 -0.9414 24 1 -0.3633 -1.0214 0.1137 25 1 2.2405 -1.8400 -3.4692 26 1 2.9173 -1.1205 1.0287 27 1 4.1991 0.6383 1.8541 28 1 3.5492 1.6195 3.2375 29 1 4.0016 0.6779 5.3239 30 1 4.0299 -1.0702 5.6576 31 1 5.3806 -0.3091 4.7832 32 1 0.5379 0.7147 4.6409 33 1 1.5661 -0.1849 5.7822 34 1 2.2040 1.2564 4.9558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306356728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:01 Heat of formation + Delta-G solvation = -15.826220 kcal Electronic energy + Delta-G solvation = -13012.711714 eV Core-core repulsion = 10944.676042 eV Total energy + Delta-G solvation = -2068.035672 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.84077 -36.94124 -34.22470 -31.24680 -30.42763 -28.53868 -26.78814 -24.63087 -23.22032 -21.58658 -19.76887 -18.75703 -16.99480 -16.65513 -15.70812 -15.48918 -15.04931 -14.77494 -14.35469 -13.98494 -13.46024 -13.27746 -13.13034 -12.97018 -12.85743 -12.70867 -12.37823 -12.18839 -11.77592 -11.63975 -11.40918 -11.02519 -10.85461 -10.76841 -10.41389 -9.14010 -8.76270 -6.40423 1.43475 1.49957 1.69952 2.45474 3.02656 3.34727 3.65806 3.77275 3.95866 4.14638 4.52772 4.54678 4.62427 4.68699 4.73075 4.79670 4.84676 4.89124 4.95660 5.03298 5.07952 5.14948 5.16732 5.24207 5.35866 5.52305 5.63401 5.64977 5.80383 5.99359 6.31135 6.69069 6.77865 7.38090 8.60197 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054103 B = 0.008967 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.407009 B = 3121.903611 C = 3218.747244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.192 3.808 3 H -0.004 1.004 4 C -0.609 4.609 5 H 0.021 0.979 6 C -0.019 4.019 7 N -0.936 5.936 8 Si 1.085 2.915 9 H -0.287 1.287 10 H -0.243 1.243 11 H -0.267 1.267 12 N -0.669 5.669 13 C 0.057 3.943 14 H 0.071 0.929 15 C -0.163 4.163 16 C -0.105 4.105 17 H 0.070 0.930 18 C -0.134 4.134 19 C -0.098 4.098 20 H 0.063 0.937 21 C -0.124 4.124 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.252 0.748 26 H 0.331 0.669 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 5.811 16.727 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.013 0.987 4 C -0.647 4.647 5 H 0.039 0.961 6 C -0.217 4.217 7 N -0.572 5.572 8 Si 0.906 3.094 9 H -0.213 1.213 10 H -0.167 1.167 11 H -0.193 1.193 12 N -0.298 5.298 13 C -0.054 4.054 14 H 0.090 0.910 15 C -0.202 4.202 16 C -0.123 4.123 17 H 0.089 0.911 18 C -0.191 4.191 19 C -0.117 4.117 20 H 0.081 0.919 21 C -0.182 4.182 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.149 0.851 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.023 6.680 15.787 17.142 hybrid contribution 1.498 -1.410 0.173 2.065 sum 1.476 5.269 15.960 16.872 Atomic orbital electron populations 1.22024 0.97152 1.00190 0.99591 1.19270 0.92880 0.91940 0.87626 0.98654 1.22327 1.39917 1.08857 0.93584 0.96101 1.27188 0.94183 1.08577 0.91772 1.70992 1.44102 1.09459 1.32619 0.83560 0.78846 0.70545 0.76451 1.21263 1.16693 1.19267 1.60387 1.32167 1.32403 1.04867 1.22869 0.96465 0.94422 0.91624 0.91036 1.23704 0.97492 0.99363 0.99622 1.22410 0.95693 0.97242 0.96960 0.91123 1.21689 0.99674 1.02295 0.95406 1.22537 0.95697 0.99343 0.94171 0.91865 1.21546 1.00782 0.99246 0.96593 0.93345 0.93624 0.94331 0.93933 0.85113 0.93687 0.88367 0.91346 0.91938 0.92751 0.92613 0.91078 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 9.05 71.98 0.65 -5.25 16 2 C 0.19 9.28 2.05 44.17 0.09 9.37 16 3 H 0.00 -0.19 6.51 -2.38 -0.02 -0.21 16 4 C -0.61 -35.39 8.83 25.60 0.23 -35.16 16 5 H 0.02 1.33 7.92 -2.91 -0.02 1.31 16 6 C -0.02 -1.10 5.29 84.65 0.45 -0.65 16 7 N -0.94 -59.51 13.70 21.45 0.29 -59.22 16 8 Si 1.08 50.46 26.29 68.60 1.80 52.27 16 9 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 10 H -0.24 -10.05 5.76 99.48 0.57 -9.48 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 N -0.67 -28.41 6.37 -470.61 -3.00 -31.40 16 13 C 0.06 1.92 3.58 45.44 0.16 2.08 16 14 H 0.07 2.42 7.47 -2.39 -0.02 2.40 16 15 C -0.16 -4.71 6.81 31.12 0.21 -4.50 16 16 C -0.10 -2.72 4.04 -10.27 -0.04 -2.76 16 17 H 0.07 2.05 8.01 -2.39 -0.02 2.03 16 18 C -0.13 -2.60 8.94 71.98 0.64 -1.96 16 19 C -0.10 -2.67 4.27 -10.27 -0.04 -2.72 16 20 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 21 C -0.12 -2.55 8.55 71.98 0.62 -1.94 16 22 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 23 H 0.04 2.08 4.88 -2.39 -0.01 2.06 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.25 16.28 8.73 -92.70 -0.81 15.47 16 26 H 0.33 14.60 7.60 -89.70 -0.68 13.92 16 27 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 28 H 0.10 2.40 7.52 -2.39 -0.02 2.38 16 29 H 0.07 1.17 6.42 -2.39 -0.02 1.16 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.22 6.07 -2.39 -0.01 1.20 16 Total: -1.00 -64.06 263.61 2.27 -61.78 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.21 Total: 20.05 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 2.96 Total: -43.48 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -2.70 Total: -90.62 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.80 Total: 52.27 kcal Total: -64.06 2.27 -61.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306356728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.957 kcal (2) G-P(sol) polarization free energy of solvation -64.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds