Wall clock time and date at job start Thu Apr 9 2020 14:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 H 1.09000 * 110.27107 * 52.90969 * 3 2 1 5 5 C 1.55035 * 110.29774 * 290.76411 * 3 2 1 6 6 C 1.54937 * 102.71769 * 219.14325 * 5 3 2 7 7 N 1.48531 * 103.37331 * 37.39814 * 6 5 3 8 8 C 1.46900 * 110.99995 * 200.19451 * 7 6 5 9 9 C 1.50699 * 109.46839 * 69.87635 * 8 7 6 10 10 H 1.07994 * 120.00331 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99760 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46865 * 119.99582 * 13 11 9 16 16 H 1.48497 * 109.47087 * 239.99632 * 13 11 9 17 17 C 1.47900 * 105.82345 * 320.71279 * 7 6 5 18 18 H 1.08997 * 109.91192 * 265.97584 * 17 7 6 19 19 C 1.53004 * 109.91813 * 144.68319 * 17 7 6 20 20 H 1.09007 * 109.46851 * 59.99699 * 1 2 3 21 21 H 1.08987 * 109.47447 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46858 * 299.99957 * 1 2 3 23 23 H 1.09001 * 109.46858 * 240.00043 * 2 1 3 24 24 H 1.08998 * 109.47076 * 120.00285 * 2 1 3 25 25 H 1.09004 * 110.90974 * 100.81172 * 5 3 2 26 26 H 1.09005 * 110.74113 * 337.39476 * 5 3 2 27 27 H 1.09002 * 110.66811 * 278.88221 * 6 5 3 28 28 H 1.09001 * 110.66542 * 155.91860 * 6 5 3 29 29 H 1.08997 * 109.47107 * 189.87797 * 8 7 6 30 30 H 1.09003 * 109.47145 * 309.87496 * 8 7 6 31 31 H 0.97007 * 119.99423 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.47081 * 61.45265 * 19 17 7 33 33 H 1.09001 * 109.46996 * 181.45360 * 19 17 7 34 34 H 1.09004 * 109.46792 * 301.45331 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0041 0.8156 5 6 1.7333 2.1214 -1.3596 6 6 3.0093 2.9619 -1.6168 7 7 4.1010 2.0940 -1.1057 8 6 5.3089 2.8801 -0.8213 9 6 5.0666 3.7562 0.3807 10 1 4.1111 3.7312 0.8833 11 6 6.0649 4.5897 0.8388 12 7 7.2287 4.6197 0.2270 13 14 5.7643 5.6761 2.3283 14 1 4.3844 5.4564 2.8309 15 1 6.7393 5.3343 3.3951 16 1 5.9307 7.1007 1.9436 17 6 3.5746 1.4668 0.1259 18 1 3.8666 2.0548 0.9959 19 6 4.1098 0.0391 0.2535 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0275 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.8565 2.7646 -1.2843 26 1 1.5990 1.3747 -2.1424 27 1 2.9710 3.8991 -1.0616 28 1 3.1361 3.1524 -2.6825 29 1 6.1413 2.2065 -0.6181 30 1 5.5481 3.5035 -1.6830 31 1 7.9312 5.2059 0.5495 32 1 5.1971 0.0638 0.3250 33 1 3.6971 -0.4249 1.1493 34 1 3.8163 -0.5386 -0.6230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306489300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:04 Heat of formation + Delta-G solvation = -11.480318 kcal Electronic energy + Delta-G solvation = -13256.260720 eV Core-core repulsion = 11188.413500 eV Total energy + Delta-G solvation = -2067.847220 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.82279 -34.28701 -32.37373 -30.65808 -29.47993 -26.02990 -24.67012 -22.88139 -22.15974 -19.93678 -18.26265 -16.28553 -15.57146 -14.55607 -14.22669 -14.13312 -13.67128 -12.97782 -12.72908 -12.12274 -12.01915 -11.90372 -11.48977 -11.04885 -10.96786 -10.89977 -10.66307 -10.46161 -10.13567 -9.98971 -9.92889 -9.85895 -9.54071 -9.43967 -8.41570 -7.15586 -6.02237 -4.10291 3.26035 3.34212 3.37370 4.40487 5.08528 5.13414 5.24626 5.28554 5.38218 5.60942 5.70634 5.86554 5.97131 6.09476 6.17402 6.19591 6.26647 6.30622 6.41946 6.53845 6.56160 6.63459 6.75763 6.86184 6.95401 7.15356 7.30323 7.55941 7.92434 8.11563 8.26208 8.35512 9.01070 9.55469 11.03224 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044737 B = 0.010029 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.730795 B = 2791.187790 C = 2892.720048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.095 4.095 4 H 0.063 0.937 5 C -0.116 4.116 6 C 0.039 3.961 7 N -0.519 5.519 8 C 0.177 3.823 9 C -0.547 4.547 10 H 0.061 0.939 11 C 0.064 3.936 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.058 3.942 18 H 0.079 0.921 19 C -0.129 4.129 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 -6.481 -0.326 12.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.082 0.918 5 C -0.155 4.155 6 C -0.089 4.089 7 N -0.242 5.242 8 C 0.051 3.949 9 C -0.586 4.586 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.051 4.051 18 H 0.097 0.903 19 C -0.187 4.187 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.827 -6.791 -0.713 11.966 hybrid contribution -0.166 1.433 1.467 2.057 sum -9.992 -5.358 0.753 11.363 Atomic orbital electron populations 1.21819 0.96893 1.00723 1.01485 1.21701 0.94551 0.96849 1.02013 1.22141 0.96455 0.95456 0.97355 0.91817 1.22616 0.97389 0.98642 0.96803 1.23029 0.90495 0.95910 0.99503 1.65019 1.04974 1.28892 1.25358 1.19832 0.87812 0.91806 0.95451 1.21799 0.99319 1.23366 1.14098 0.92073 1.24983 0.95113 0.96893 0.96889 1.69967 1.03903 1.38667 1.40344 0.86611 0.78274 0.80543 0.83049 1.19823 1.20925 1.20954 1.22464 0.91439 0.95680 0.95511 0.90285 1.21774 1.00767 0.96336 0.99776 0.92923 0.93440 0.93222 0.91701 0.91917 0.92518 0.91747 0.93062 0.91916 0.95078 0.95413 0.92896 0.93172 0.93599 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.78 37.16 0.36 -1.41 16 2 C -0.11 -1.57 4.12 -26.73 -0.11 -1.68 16 3 C -0.09 -1.58 3.00 -89.03 -0.27 -1.85 16 4 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 5 C -0.12 -1.90 5.90 -24.63 -0.15 -2.05 16 6 C 0.04 0.78 6.36 -1.90 -0.01 0.77 16 7 N -0.52 -11.52 5.17 -224.01 -1.16 -12.68 16 8 C 0.18 4.69 5.30 -4.98 -0.03 4.66 16 9 C -0.55 -15.14 7.00 -34.44 -0.24 -15.38 16 10 H 0.06 1.68 6.00 -52.49 -0.31 1.36 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 13 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.06 1.16 2.70 -66.65 -0.18 0.98 16 18 H 0.08 1.83 5.28 -51.93 -0.27 1.55 16 19 C -0.13 -2.29 8.34 37.16 0.31 -1.98 16 20 H 0.05 0.60 7.58 -51.93 -0.39 0.21 16 21 H 0.05 0.49 8.14 -51.94 -0.42 0.07 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.91 6.94 -51.93 -0.36 0.55 16 24 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.99 7.77 -51.93 -0.40 0.59 16 27 H 0.05 1.12 7.04 -51.93 -0.37 0.76 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 34 H 0.05 0.87 6.80 -51.93 -0.35 0.51 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -28.80 261.26 -7.57 -36.38 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.66 Total: -2.18 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.41 Total: -16.23 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.42 Total: -38.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.80 -7.57 -36.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.899 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds