Wall clock time and date at job start Thu Apr 9 2020 14:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47500 * 2 1 4 4 H 1.08997 * 110.87871 * 57.39683 * 3 2 1 5 5 C 1.55140 * 110.99237 * 293.54477 * 3 2 1 6 6 C 1.54311 * 103.02352 * 206.25464 * 5 3 2 7 7 N 1.47449 * 107.23220 * 22.28584 * 6 5 3 8 8 C 1.46899 * 110.99925 * 123.25698 * 7 6 5 9 9 C 1.50703 * 109.47107 * 69.87541 * 8 7 6 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46999 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46942 * 119.99666 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99580 * 13 11 9 17 17 C 1.47840 * 108.56439 * 0.98907 * 7 6 5 18 18 H 1.09005 * 110.37490 * 94.73667 * 17 7 6 19 19 C 1.53002 * 110.37333 * 217.07141 * 17 7 6 20 20 H 1.09001 * 109.47405 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46598 * 300.00443 * 1 2 3 22 22 H 1.09004 * 109.46910 * 59.99649 * 1 2 3 23 23 H 1.09007 * 109.46914 * 239.99952 * 2 1 3 24 24 H 1.09000 * 109.47372 * 120.00226 * 2 1 3 25 25 H 1.09003 * 110.70397 * 87.86733 * 5 3 2 26 26 H 1.09001 * 110.70865 * 324.64335 * 5 3 2 27 27 H 1.08997 * 109.89165 * 262.88043 * 6 5 3 28 28 H 1.09000 * 109.88867 * 141.68736 * 6 5 3 29 29 H 1.09002 * 109.47043 * 189.87520 * 8 7 6 30 30 H 1.09001 * 109.47354 * 309.87582 * 8 7 6 31 31 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.46894 * 58.54950 * 19 17 7 33 33 H 1.08998 * 109.47151 * 178.54202 * 19 17 7 34 34 H 1.08990 * 109.47434 * 298.55345 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6522 1.9916 0.8579 5 6 1.6799 2.1593 -1.3278 6 6 2.7755 3.2392 -1.4483 7 7 3.9188 2.7947 -0.6301 8 6 5.1432 2.7116 -1.4375 9 6 5.5940 4.1003 -1.8109 10 1 5.0272 4.9587 -1.4817 11 6 6.7292 4.2749 -2.5736 12 7 7.4191 3.2296 -2.9748 13 14 7.2883 5.9964 -3.0358 14 1 6.3469 6.9926 -2.4645 15 1 8.6508 6.2359 -2.4961 16 1 7.3113 6.1289 -4.5147 17 6 3.5883 1.4836 -0.0324 18 1 3.9765 0.6752 -0.6521 19 6 4.1535 1.3872 1.3862 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.6928 2.6172 -1.2631 26 1 1.7293 1.4648 -2.1665 27 1 2.4001 4.1918 -1.0745 28 1 3.0822 3.3418 -2.4893 29 1 5.9258 2.2183 -0.8609 30 1 4.9432 2.1388 -2.3430 31 1 8.2175 3.3523 -3.5117 32 1 3.7439 2.1926 1.9959 33 1 3.8795 0.4264 1.8219 34 1 5.2393 1.4741 1.3513 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306489302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:07 Heat of formation + Delta-G solvation = -19.983229 kcal Electronic energy + Delta-G solvation = -12985.189374 eV Core-core repulsion = 10916.973441 eV Total energy + Delta-G solvation = -2068.215934 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.74773 -34.21453 -32.46266 -30.78414 -29.63682 -26.07582 -25.16387 -22.40137 -22.19331 -19.60627 -19.16626 -16.11927 -15.38280 -14.94948 -14.21110 -14.10177 -13.42334 -13.20127 -12.72514 -12.41399 -12.17980 -11.71899 -11.62823 -11.44193 -11.16383 -10.93260 -10.84547 -10.49542 -10.30806 -10.26747 -9.99596 -9.96671 -9.62540 -9.09720 -8.39823 -7.15022 -5.98545 -3.99477 3.33327 3.40444 3.46115 4.46142 4.88366 4.93409 5.08891 5.33615 5.38039 5.44297 5.61557 5.68907 5.83991 5.88461 6.06495 6.07995 6.09169 6.14878 6.20855 6.29146 6.45087 6.51058 6.62971 6.76178 6.83252 6.87355 7.29764 7.40681 7.88711 8.14588 8.29989 8.61885 9.09700 9.64860 11.12367 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.061298 B = 0.008239 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.677017 B = 3397.702729 C = 3566.608734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.137 4.137 6 C 0.054 3.946 7 N -0.525 5.525 8 C 0.189 3.811 9 C -0.503 4.503 10 H 0.063 0.937 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.070 3.930 18 H 0.044 0.956 19 C -0.129 4.129 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.028 0.972 30 H -0.010 1.010 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.875 -4.855 4.958 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.112 4.112 4 H 0.096 0.904 5 C -0.176 4.176 6 C -0.074 4.074 7 N -0.250 5.250 8 C 0.064 3.936 9 C -0.542 4.542 10 H 0.081 0.919 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.039 4.039 18 H 0.062 0.938 19 C -0.187 4.187 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.600 -4.525 5.242 12.662 hybrid contribution 0.375 0.301 -1.044 1.150 sum -10.225 -4.225 4.197 11.833 Atomic orbital electron populations 1.21761 0.96171 1.00969 1.01746 1.21488 0.95469 0.96454 1.01744 1.22374 0.95620 0.95161 0.98020 0.90423 1.22882 0.99150 0.98479 0.97064 1.22617 0.90237 0.96919 0.97649 1.63565 1.04085 1.23491 1.33870 1.19882 0.86150 0.97222 0.90365 1.21223 1.09251 0.92604 1.31072 0.91920 1.25004 0.96593 0.97009 0.96171 1.69974 1.17590 1.29136 1.37368 0.86453 0.78548 0.84551 0.77946 1.19669 1.21036 1.21162 1.22519 0.93028 0.92382 0.95978 0.93782 1.21643 1.01331 0.99913 0.95800 0.93264 0.92958 0.92708 0.92216 0.92121 0.91882 0.92144 0.92123 0.92366 0.95439 0.99205 0.93059 0.92587 0.93645 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.76 37.16 0.36 -1.24 16 2 C -0.11 -1.44 5.45 -26.73 -0.15 -1.59 16 3 C -0.09 -1.41 2.48 -88.48 -0.22 -1.63 16 4 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 5 C -0.14 -2.19 5.58 -24.91 -0.14 -2.33 16 6 C 0.05 1.09 6.39 -2.84 -0.02 1.07 16 7 N -0.53 -11.81 4.80 -224.81 -1.08 -12.89 16 8 C 0.19 5.10 4.30 -4.98 -0.02 5.08 16 9 C -0.50 -14.55 8.67 -34.44 -0.30 -14.85 16 10 H 0.06 1.81 7.78 -52.49 -0.41 1.40 16 11 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 13 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.07 1.30 2.48 -66.19 -0.16 1.14 16 18 H 0.04 0.88 7.71 -51.93 -0.40 0.48 16 19 C -0.13 -2.18 9.59 37.16 0.36 -1.82 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.59 7.50 -51.93 -0.39 0.20 16 23 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 24 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 25 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 26 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.28 7.31 -51.93 -0.38 0.90 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H -0.01 -0.28 7.96 -51.93 -0.41 -0.70 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 272.95 15.07 4.11 4.11 Total: -1.00 -30.07 272.95 -7.81 -37.88 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -6.18 Total: -4.84 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.38 Total: -14.73 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.34 Total: -39.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.07 -7.81 -37.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.901 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds