Wall clock time and date at job start Thu Apr 9 2020 14:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46661 * 2 1 4 4 H 1.08996 * 110.90815 * 302.58460 * 3 2 1 5 5 C 1.55142 * 110.99002 * 66.45772 * 3 2 1 6 6 C 1.54312 * 103.17714 * 153.82761 * 5 3 2 7 7 N 1.47443 * 107.23612 * 337.62814 * 6 5 3 8 8 C 1.46900 * 111.00227 * 236.74273 * 7 6 5 9 9 C 1.50701 * 109.47223 * 69.87126 * 8 7 6 10 10 H 1.08007 * 119.99473 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00323 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99626 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00086 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47187 * 59.99857 * 13 11 9 15 15 H 1.48495 * 109.46864 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47081 * 300.00282 * 13 11 9 17 17 C 1.47844 * 108.56494 * 359.01050 * 7 6 5 18 18 H 1.09007 * 110.37325 * 265.15824 * 17 7 6 19 19 C 1.52997 * 110.37736 * 142.92837 * 17 7 6 20 20 H 1.08995 * 109.46640 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46878 * 299.99779 * 1 2 3 22 22 H 1.09005 * 109.46856 * 60.00168 * 1 2 3 23 23 H 1.08998 * 109.46878 * 240.00220 * 2 1 3 24 24 H 1.08993 * 109.46881 * 120.00259 * 2 1 3 25 25 H 1.09002 * 110.70816 * 35.35609 * 5 3 2 26 26 H 1.09005 * 110.70106 * 272.29750 * 5 3 2 27 27 H 1.08997 * 109.89327 * 97.03090 * 6 5 3 28 28 H 1.09001 * 109.89155 * 218.05905 * 6 5 3 29 29 H 1.08999 * 109.47147 * 189.87070 * 8 7 6 30 30 H 1.08994 * 109.46907 * 309.87190 * 8 7 6 31 31 H 0.96997 * 119.99770 * 179.97438 * 12 11 9 32 32 H 1.08992 * 109.47559 * 61.45143 * 19 17 7 33 33 H 1.08998 * 109.47166 * 181.45544 * 19 17 7 34 34 H 1.09005 * 109.47316 * 301.45211 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6526 1.9920 -0.8579 5 6 1.6797 2.1593 1.3279 6 6 2.7723 3.2421 1.4509 7 7 3.9184 2.8008 0.6350 8 6 5.1414 2.7208 1.4449 9 6 5.0300 1.5693 2.4106 10 1 4.1397 0.9578 2.4213 11 6 6.0643 1.2964 3.2805 12 7 7.1484 2.0407 3.2670 13 14 5.9258 -0.1306 4.4780 14 1 5.7498 -1.3963 3.7216 15 1 7.1622 -0.2115 5.2966 16 1 4.7556 0.0814 5.3673 17 6 3.5927 1.4889 0.0363 18 1 3.9834 0.6815 0.6557 19 6 4.1610 1.3943 -1.3810 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.7292 1.4648 2.1666 26 1 0.6913 2.6146 1.2642 27 1 2.3952 4.1937 1.0764 28 1 3.0745 3.3473 2.4929 29 1 6.0001 2.5655 0.7918 30 1 5.2707 3.6496 2.0004 31 1 7.8760 1.8490 3.8792 32 1 5.2466 1.4840 -1.3440 33 1 3.8906 0.4328 -1.8175 34 1 3.7507 2.1987 -1.9916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306489303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:09 Heat of formation + Delta-G solvation = -18.654650 kcal Electronic energy + Delta-G solvation = -13290.588061 eV Core-core repulsion = 11222.429740 eV Total energy + Delta-G solvation = -2068.158322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.68306 -34.14772 -32.39864 -30.61024 -29.52954 -26.10484 -24.90956 -22.44936 -22.15807 -19.54244 -18.99796 -16.22716 -15.25141 -14.87191 -14.16459 -13.99055 -13.26785 -13.03606 -12.67559 -12.39038 -12.01393 -11.81836 -11.44981 -11.40176 -10.96850 -10.83388 -10.69290 -10.45628 -10.21560 -10.09465 -9.96290 -9.80053 -9.53899 -9.37529 -8.40156 -7.11268 -6.00240 -4.08794 3.28588 3.33840 3.35755 4.41379 5.02758 5.09446 5.25281 5.29875 5.49023 5.58426 5.74814 5.82429 6.00764 6.06272 6.18774 6.23609 6.27015 6.33850 6.34102 6.48482 6.59656 6.64629 6.73908 6.87599 6.94952 7.16392 7.31379 7.58512 7.93659 8.15574 8.33089 8.38194 9.02511 9.57066 11.04766 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034148 B = 0.011823 C = 0.010503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.760172 B = 2367.750173 C = 2665.381818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.131 4.131 6 C 0.051 3.949 7 N -0.533 5.533 8 C 0.182 3.818 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.887 3.113 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.069 3.931 18 H 0.079 0.921 19 C -0.128 4.128 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 -2.450 -5.351 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.169 4.169 6 C -0.078 4.078 7 N -0.256 5.256 8 C 0.056 3.944 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.715 3.285 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.040 4.040 18 H 0.097 0.903 19 C -0.186 4.186 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.631 -2.038 -5.653 11.352 hybrid contribution -0.044 -1.364 1.489 2.019 sum -9.676 -3.402 -4.165 11.070 Atomic orbital electron populations 1.21762 0.96421 1.00840 1.01552 1.21471 0.95157 0.96682 1.01860 1.22444 0.96367 0.94934 0.97520 0.91072 1.22777 0.98294 0.98420 0.97422 1.22574 0.90925 0.96517 0.97737 1.63820 1.04228 1.25115 1.32456 1.19882 0.87207 0.96207 0.91115 1.21759 1.02438 1.14992 1.19283 0.92301 1.24979 0.95331 0.96349 0.97205 1.69938 1.06294 1.38920 1.37820 0.86741 0.77404 0.83111 0.81290 1.20244 1.21216 1.20294 1.22705 0.92118 0.93665 0.95499 0.90291 1.21634 1.01120 0.99568 0.96280 0.93373 0.92780 0.93130 0.92261 0.91988 0.91805 0.92501 0.92901 0.92293 0.95220 0.95443 0.92808 0.92830 0.93772 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.76 37.16 0.36 -1.44 16 2 C -0.11 -1.65 5.47 -26.73 -0.15 -1.80 16 3 C -0.09 -1.55 2.50 -88.22 -0.22 -1.77 16 4 H 0.07 1.13 8.06 -51.93 -0.42 0.72 16 5 C -0.13 -2.25 5.57 -24.91 -0.14 -2.39 16 6 C 0.05 1.02 6.44 -2.84 -0.02 1.00 16 7 N -0.53 -11.85 5.07 -224.52 -1.14 -12.99 16 8 C 0.18 4.80 5.04 -4.98 -0.03 4.78 16 9 C -0.55 -15.03 7.20 -34.44 -0.25 -15.28 16 10 H 0.06 1.60 6.43 -52.48 -0.34 1.26 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.07 1.37 2.14 -65.93 -0.14 1.23 16 18 H 0.08 1.81 5.49 -51.93 -0.29 1.52 16 19 C -0.13 -2.28 9.59 37.16 0.36 -1.93 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.66 7.50 -51.93 -0.39 0.27 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 24 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 25 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.30 7.23 -51.93 -0.38 0.92 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.78 8.04 -51.93 -0.42 0.36 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 268.79 15.07 4.05 4.05 Total: -1.00 -28.66 268.79 -7.69 -36.35 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.00 Total: -2.30 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.32 Total: -15.88 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.40 Total: -38.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.66 -7.69 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.694 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds