Wall clock time and date at job start Thu Apr 9 2020 14:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46661 * 2 1 4 4 H 1.08996 * 110.90815 * 302.58460 * 3 2 1 5 5 C 1.55142 * 110.99002 * 66.45772 * 3 2 1 6 6 C 1.54312 * 103.17714 * 153.82761 * 5 3 2 7 7 N 1.47443 * 107.23612 * 337.62814 * 6 5 3 8 8 C 1.46900 * 111.00227 * 236.74273 * 7 6 5 9 9 C 1.50701 * 109.47223 * 69.87126 * 8 7 6 10 10 H 1.08007 * 119.99473 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00323 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99626 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00086 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47187 * 59.99857 * 13 11 9 15 15 H 1.48495 * 109.46864 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47081 * 300.00282 * 13 11 9 17 17 C 1.47844 * 108.56494 * 359.01050 * 7 6 5 18 18 H 1.09007 * 110.37325 * 265.15824 * 17 7 6 19 19 C 1.52997 * 110.37736 * 142.92837 * 17 7 6 20 20 H 1.08995 * 109.46640 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46878 * 299.99779 * 1 2 3 22 22 H 1.09005 * 109.46856 * 60.00168 * 1 2 3 23 23 H 1.08998 * 109.46878 * 240.00220 * 2 1 3 24 24 H 1.08993 * 109.46881 * 120.00259 * 2 1 3 25 25 H 1.09002 * 110.70816 * 35.35609 * 5 3 2 26 26 H 1.09005 * 110.70106 * 272.29750 * 5 3 2 27 27 H 1.08997 * 109.89327 * 97.03090 * 6 5 3 28 28 H 1.09001 * 109.89155 * 218.05905 * 6 5 3 29 29 H 1.08999 * 109.47147 * 189.87070 * 8 7 6 30 30 H 1.08994 * 109.46907 * 309.87190 * 8 7 6 31 31 H 0.96997 * 119.99770 * 179.97438 * 12 11 9 32 32 H 1.08992 * 109.47559 * 61.45143 * 19 17 7 33 33 H 1.08998 * 109.47166 * 181.45544 * 19 17 7 34 34 H 1.09005 * 109.47316 * 301.45211 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6526 1.9920 -0.8579 5 6 1.6797 2.1593 1.3279 6 6 2.7723 3.2421 1.4509 7 7 3.9184 2.8008 0.6350 8 6 5.1414 2.7208 1.4449 9 6 5.0300 1.5693 2.4106 10 1 4.1397 0.9578 2.4213 11 6 6.0643 1.2964 3.2805 12 7 7.1484 2.0407 3.2670 13 14 5.9258 -0.1306 4.4780 14 1 5.7498 -1.3963 3.7216 15 1 7.1622 -0.2115 5.2966 16 1 4.7556 0.0814 5.3673 17 6 3.5927 1.4889 0.0363 18 1 3.9834 0.6815 0.6557 19 6 4.1610 1.3943 -1.3810 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.7292 1.4648 2.1666 26 1 0.6913 2.6146 1.2642 27 1 2.3952 4.1937 1.0764 28 1 3.0745 3.3473 2.4929 29 1 6.0001 2.5655 0.7918 30 1 5.2707 3.6496 2.0004 31 1 7.8760 1.8490 3.8792 32 1 5.2466 1.4840 -1.3440 33 1 3.8906 0.4328 -1.8175 34 1 3.7507 2.1987 -1.9916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306489303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:08 Heat of formation + Delta-G solvation = -36.500643 kcal Electronic energy + Delta-G solvation = -13291.361922 eV Core-core repulsion = 11222.429740 eV Total energy + Delta-G solvation = -2068.932182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27402 -35.77250 -34.30205 -32.12332 -31.13612 -27.99098 -26.37424 -24.35355 -23.53475 -20.92705 -20.73749 -18.34006 -16.98130 -16.52975 -15.85235 -15.25791 -14.91123 -14.56984 -14.29846 -14.04901 -13.59262 -13.24441 -13.02803 -12.85066 -12.69142 -12.58220 -12.21966 -12.06080 -11.86124 -11.78712 -11.66056 -11.29129 -11.18422 -11.00841 -10.60545 -8.98961 -8.15352 -6.34752 1.34755 1.36511 1.44549 2.35747 3.08420 3.44772 3.76492 3.90993 4.12824 4.41984 4.49579 4.61656 4.63477 4.70589 4.79430 4.89108 5.02157 5.02638 5.07115 5.13217 5.20107 5.21848 5.26850 5.34509 5.43699 5.46366 5.53784 5.67310 5.75049 6.06878 6.33198 6.55429 6.87714 7.35830 8.86930 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034148 B = 0.011823 C = 0.010503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.760172 B = 2367.750173 C = 2665.381818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.081 4.081 4 H 0.089 0.911 5 C -0.123 4.123 6 C 0.046 3.954 7 N -0.537 5.537 8 C 0.198 3.802 9 C -0.549 4.549 10 H 0.061 0.939 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.061 3.939 18 H 0.046 0.954 19 C -0.122 4.122 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.030 0.970 29 H -0.001 1.001 30 H -0.002 1.002 31 H 0.264 0.736 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.163 -3.633 -5.908 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.100 4.100 4 H 0.107 0.893 5 C -0.161 4.161 6 C -0.083 4.083 7 N -0.261 5.261 8 C 0.071 3.929 9 C -0.588 4.588 10 H 0.079 0.921 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.781 3.219 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.048 4.048 18 H 0.064 0.936 19 C -0.180 4.180 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.883 -3.224 -6.221 13.794 hybrid contribution 0.654 -0.941 1.617 1.982 sum -11.229 -4.165 -4.603 12.831 Atomic orbital electron populations 1.21720 0.94125 1.02033 1.02188 1.21453 0.97086 0.94834 1.01570 1.22408 0.93240 0.96687 0.97655 0.89293 1.22732 0.98749 0.97257 0.97386 1.22661 0.91141 0.98601 0.95849 1.63805 1.03615 1.26774 1.31892 1.19496 0.88414 0.94534 0.90505 1.21972 1.02474 1.15056 1.19301 0.92052 1.25870 0.94941 0.99157 0.99155 1.70073 1.07140 1.40779 1.38888 0.85634 0.77647 0.79713 0.78912 1.19307 1.20749 1.19390 1.22803 0.95119 0.91116 0.95736 0.93621 1.21592 0.99508 1.01617 0.95292 0.92024 0.92849 0.91756 0.91210 0.93748 0.93131 0.89176 0.90917 0.95167 0.98323 0.98428 0.92671 0.95223 0.91080 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.76 71.99 0.70 -2.21 16 2 C -0.11 -2.91 5.47 30.60 0.17 -2.75 16 3 C -0.08 -2.47 2.50 -9.24 -0.02 -2.50 16 4 H 0.09 2.47 8.06 -2.39 -0.02 2.45 16 5 C -0.12 -3.97 5.57 31.77 0.18 -3.80 16 6 C 0.05 1.81 6.44 86.64 0.56 2.37 16 7 N -0.54 -24.21 5.07 -864.23 -4.38 -28.59 16 8 C 0.20 10.91 5.04 85.56 0.43 11.34 16 9 C -0.55 -31.07 7.20 25.60 0.18 -30.88 16 10 H 0.06 3.38 6.43 -2.91 -0.02 3.37 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 13 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 C 0.06 2.38 2.14 45.55 0.10 2.48 16 18 H 0.05 2.11 5.49 -2.38 -0.01 2.10 16 19 C -0.12 -4.22 9.59 71.98 0.69 -3.53 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 1.09 7.50 -2.39 -0.02 1.08 16 22 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 24 H 0.04 1.31 8.11 -2.39 -0.02 1.29 16 25 H 0.05 1.77 8.01 -2.39 -0.02 1.75 16 26 H 0.09 2.34 8.13 -2.38 -0.02 2.32 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.03 1.35 7.23 -2.39 -0.02 1.33 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.00 -0.15 8.04 -2.39 -0.02 -0.17 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -62.96 268.79 2.41 -60.54 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.03 Total: 6.51 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 3.45 Total: -28.56 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -4.09 Total: -85.02 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.96 2.41 -60.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.042 kcal (2) G-P(sol) polarization free energy of solvation -62.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds