Wall clock time and date at job start Thu Apr 9 2020 14:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.05587 * 2 1 4 4 C 1.53877 * 110.03272 * 238.59002 * 2 1 3 5 5 C 1.54266 * 106.59725 * 240.71397 * 4 2 1 6 6 C 1.54890 * 104.19535 * 336.38572 * 5 4 2 7 7 C 1.54262 * 110.03493 * 121.42257 * 2 1 3 8 8 H 1.08997 * 110.48672 * 24.21635 * 7 2 1 9 9 N 1.46897 * 110.59645 * 261.62881 * 7 2 1 10 10 C 1.46905 * 110.99817 * 182.78514 * 9 7 2 11 11 C 1.46900 * 111.00396 * 58.83327 * 9 7 2 12 12 C 1.50703 * 109.47456 * 190.00174 * 11 9 7 13 13 H 1.08000 * 119.99782 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00155 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99894 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99962 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47213 * 59.99980 * 16 14 12 18 18 H 1.48509 * 109.47032 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47241 * 299.99608 * 16 14 12 20 20 H 1.09003 * 109.47109 * 298.57818 * 1 2 3 21 21 H 1.09005 * 109.47436 * 58.58211 * 1 2 3 22 22 H 1.09000 * 109.47018 * 178.57618 * 1 2 3 23 23 H 1.08998 * 110.03751 * 121.42731 * 4 2 1 24 24 H 1.09007 * 110.07219 * 0.02562 * 4 2 1 25 25 H 1.09002 * 110.48580 * 217.70980 * 5 4 2 26 26 H 1.09000 * 110.59562 * 95.12477 * 5 4 2 27 27 H 1.08990 * 110.75733 * 279.62799 * 6 5 4 28 28 H 1.08998 * 110.90897 * 156.33059 * 6 5 4 29 29 H 1.08995 * 109.47444 * 64.80725 * 10 9 7 30 30 H 1.09007 * 109.46860 * 184.80405 * 10 9 7 31 31 H 1.08996 * 109.47155 * 304.80201 * 10 9 7 32 32 H 1.09002 * 109.46782 * 309.99737 * 11 9 7 33 33 H 1.08993 * 109.47247 * 69.99491 * 11 9 7 34 34 H 0.96995 * 120.00079 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7534 -1.2338 5 6 2.8875 -1.9405 -0.7037 6 6 3.3138 -1.5007 0.7189 7 6 2.0585 -0.7556 1.2367 8 1 1.3143 -1.4661 1.5964 9 7 2.4236 0.1880 2.3017 10 6 2.9898 -0.5178 3.4591 11 6 1.2703 1.0073 2.6975 12 6 1.7313 2.1188 3.6048 13 1 2.7764 2.2074 3.8621 14 6 0.8187 3.0219 4.1073 15 7 -0.4541 2.9137 3.7943 16 14 1.3900 4.3991 5.2325 17 1 2.3763 5.2469 4.5158 18 1 0.2241 5.2274 5.6324 19 1 2.0238 3.8183 6.4433 20 1 -0.3633 0.4916 0.9025 21 1 -0.3634 0.5357 -0.8770 22 1 -0.3633 -1.0274 -0.0255 23 1 2.6867 -0.0952 -1.8326 24 1 1.2233 -1.1190 -1.8334 25 1 3.7637 -2.1035 -1.3312 26 1 2.2791 -2.8438 -0.6576 27 1 4.1710 -0.8291 0.6750 28 1 3.5345 -2.3660 1.3438 29 1 3.9290 -0.9907 3.1724 30 1 3.1722 0.1934 4.2647 31 1 2.2882 -1.2797 3.7988 32 1 0.8052 1.4334 1.8085 33 1 0.5462 0.3854 3.2237 34 1 -1.0961 3.5492 4.1475 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306543037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:11 Heat of formation + Delta-G solvation = -16.084286 kcal Electronic energy + Delta-G solvation = -13181.398521 eV Core-core repulsion = 11113.351658 eV Total energy + Delta-G solvation = -2068.046863 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.66472 -34.84747 -32.35030 -30.94114 -27.81324 -26.67820 -25.07541 -23.71380 -20.95740 -19.84168 -18.74448 -16.41637 -15.52811 -14.74032 -14.55483 -13.81700 -13.42607 -12.98996 -12.78458 -12.34577 -12.03119 -11.77285 -11.57958 -11.07959 -10.94506 -10.73863 -10.51229 -10.40460 -10.26737 -10.19994 -10.08634 -9.99354 -9.50400 -9.05457 -8.37103 -7.13933 -5.98236 -3.98673 3.35750 3.39536 3.42755 4.45943 4.93797 5.00301 5.07322 5.36247 5.40428 5.73400 5.82028 5.90265 5.97349 5.99011 6.07097 6.17642 6.24330 6.25748 6.33193 6.47417 6.51279 6.60971 6.70236 6.79692 6.86497 6.97249 7.43084 7.45047 7.86931 8.19397 8.30185 8.65690 9.08923 9.64829 11.12527 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050362 B = 0.009613 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.837877 B = 2912.036514 C = 3241.024181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 H 0.084 0.916 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.116 4.116 7 C 0.084 3.916 8 H 0.032 0.968 9 N -0.535 5.535 10 C 0.037 3.963 11 C 0.186 3.814 12 C -0.507 4.507 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.007 0.993 32 H 0.043 0.957 33 H -0.014 1.014 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -7.602 -6.813 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.025 4.025 8 H 0.050 0.950 9 N -0.259 5.259 10 C -0.112 4.112 11 C 0.061 3.939 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.204 1.204 20 H 0.092 0.908 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.004 0.996 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.377 -7.189 -6.960 10.921 hybrid contribution -0.496 0.229 1.006 1.144 sum 3.881 -6.960 -5.954 9.947 Atomic orbital electron populations 1.22060 0.95379 1.00745 1.02651 1.21703 0.95290 1.00479 0.93155 0.89752 1.22188 0.98954 0.96839 0.97544 1.22293 0.99111 0.97875 0.96737 1.22528 0.98676 0.99085 0.95071 1.22481 0.94642 0.92880 0.92525 0.94985 1.62233 1.34180 1.21052 1.08473 1.22206 0.97312 0.97161 0.94500 1.19881 0.86499 0.91383 0.96108 1.21178 0.94314 1.11146 1.27923 0.92048 1.24975 0.94860 0.97962 0.96839 1.69946 1.01421 1.37198 1.45335 0.86586 0.77975 0.81995 0.80988 1.20216 1.21400 1.20373 0.90783 0.93392 0.93745 0.92215 0.92316 0.92244 0.92277 0.90743 0.92603 0.93662 0.90771 0.97478 0.93910 0.99600 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.53 37.16 0.32 -2.33 16 2 C -0.09 -1.55 2.38 -89.50 -0.21 -1.76 16 3 H 0.08 1.69 7.67 -51.93 -0.40 1.29 16 4 C -0.12 -1.66 6.46 -25.61 -0.17 -1.83 16 5 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 6 C -0.12 -1.79 5.38 -24.74 -0.13 -1.92 16 7 C 0.08 1.58 2.14 -66.06 -0.14 1.44 16 8 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 9 N -0.54 -11.91 4.58 -234.33 -1.07 -12.99 16 10 C 0.04 0.75 9.16 60.07 0.55 1.30 16 11 C 0.19 4.91 3.92 -4.97 -0.02 4.89 16 12 C -0.51 -14.45 8.39 -34.44 -0.29 -14.74 16 13 H 0.06 1.74 7.16 -52.49 -0.38 1.36 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H 0.07 1.54 5.86 -51.93 -0.30 1.24 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 29 H 0.04 0.79 7.32 -51.93 -0.38 0.41 16 30 H 0.07 1.61 6.67 -51.93 -0.35 1.26 16 31 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 32 H 0.04 1.17 4.92 -51.93 -0.26 0.92 16 33 H -0.01 -0.40 8.12 -51.93 -0.42 -0.82 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 263.97 15.07 3.98 3.98 Total: -1.00 -29.36 263.97 -7.54 -36.90 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.80 Total: -3.36 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.36 Total: -15.28 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.34 Total: -39.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.36 -7.54 -36.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.816 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds