Wall clock time and date at job start Thu Apr 9 2020 14:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.05587 * 2 1 4 4 C 1.53877 * 110.03272 * 238.59002 * 2 1 3 5 5 C 1.54266 * 106.59725 * 240.71397 * 4 2 1 6 6 C 1.54890 * 104.19535 * 336.38572 * 5 4 2 7 7 C 1.54262 * 110.03493 * 121.42257 * 2 1 3 8 8 H 1.08997 * 110.48672 * 24.21635 * 7 2 1 9 9 N 1.46897 * 110.59645 * 261.62881 * 7 2 1 10 10 C 1.46905 * 110.99817 * 182.78514 * 9 7 2 11 11 C 1.46900 * 111.00396 * 58.83327 * 9 7 2 12 12 C 1.50703 * 109.47456 * 190.00174 * 11 9 7 13 13 H 1.08000 * 119.99782 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00155 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99894 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 119.99962 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47213 * 59.99980 * 16 14 12 18 18 H 1.48509 * 109.47032 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47241 * 299.99608 * 16 14 12 20 20 H 1.09003 * 109.47109 * 298.57818 * 1 2 3 21 21 H 1.09005 * 109.47436 * 58.58211 * 1 2 3 22 22 H 1.09000 * 109.47018 * 178.57618 * 1 2 3 23 23 H 1.08998 * 110.03751 * 121.42731 * 4 2 1 24 24 H 1.09007 * 110.07219 * 0.02562 * 4 2 1 25 25 H 1.09002 * 110.48580 * 217.70980 * 5 4 2 26 26 H 1.09000 * 110.59562 * 95.12477 * 5 4 2 27 27 H 1.08990 * 110.75733 * 279.62799 * 6 5 4 28 28 H 1.08998 * 110.90897 * 156.33059 * 6 5 4 29 29 H 1.08995 * 109.47444 * 64.80725 * 10 9 7 30 30 H 1.09007 * 109.46860 * 184.80405 * 10 9 7 31 31 H 1.08996 * 109.47155 * 304.80201 * 10 9 7 32 32 H 1.09002 * 109.46782 * 309.99737 * 11 9 7 33 33 H 1.08993 * 109.47247 * 69.99491 * 11 9 7 34 34 H 0.96995 * 120.00079 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7534 -1.2338 5 6 2.8875 -1.9405 -0.7037 6 6 3.3138 -1.5007 0.7189 7 6 2.0585 -0.7556 1.2367 8 1 1.3143 -1.4661 1.5964 9 7 2.4236 0.1880 2.3017 10 6 2.9898 -0.5178 3.4591 11 6 1.2703 1.0073 2.6975 12 6 1.7313 2.1188 3.6048 13 1 2.7764 2.2074 3.8621 14 6 0.8187 3.0219 4.1073 15 7 -0.4541 2.9137 3.7943 16 14 1.3900 4.3991 5.2325 17 1 2.3763 5.2469 4.5158 18 1 0.2241 5.2274 5.6324 19 1 2.0238 3.8183 6.4433 20 1 -0.3633 0.4916 0.9025 21 1 -0.3634 0.5357 -0.8770 22 1 -0.3633 -1.0274 -0.0255 23 1 2.6867 -0.0952 -1.8326 24 1 1.2233 -1.1190 -1.8334 25 1 3.7637 -2.1035 -1.3312 26 1 2.2791 -2.8438 -0.6576 27 1 4.1710 -0.8291 0.6750 28 1 3.5345 -2.3660 1.3438 29 1 3.9290 -0.9907 3.1724 30 1 3.1722 0.1934 4.2647 31 1 2.2882 -1.2797 3.7988 32 1 0.8052 1.4334 1.8085 33 1 0.5462 0.3854 3.2237 34 1 -1.0961 3.5492 4.1475 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:10 Heat of formation + Delta-G solvation = -34.516655 kcal Electronic energy + Delta-G solvation = -13182.197809 eV Core-core repulsion = 11113.351658 eV Total energy + Delta-G solvation = -2068.846150 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12776 -36.53272 -34.46212 -32.30683 -29.57600 -28.34375 -26.64793 -25.42333 -22.76818 -21.13628 -20.21181 -18.53395 -17.13655 -16.60921 -16.04378 -15.29206 -15.13493 -14.50377 -14.39262 -14.09509 -13.52263 -13.48822 -13.12026 -12.86961 -12.74434 -12.37308 -12.24612 -11.97685 -11.79939 -11.72253 -11.47703 -11.29560 -11.12296 -11.04869 -10.57172 -8.97714 -8.19004 -6.28685 1.39543 1.42977 1.50809 2.40325 3.12756 3.36460 3.72122 3.81708 4.08464 4.46234 4.46823 4.52184 4.60622 4.63982 4.67383 4.77029 4.85221 4.96883 5.06460 5.10883 5.12140 5.22957 5.28177 5.29267 5.32728 5.46578 5.51727 5.59213 5.68652 6.11428 6.39302 6.74260 6.88090 7.40346 8.91539 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050362 B = 0.009613 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.837877 B = 2912.036514 C = 3241.024181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.053 0.947 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.075 3.925 8 H 0.021 0.979 9 N -0.544 5.544 10 C 0.040 3.960 11 C 0.205 3.795 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.268 1.268 20 H 0.029 0.971 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.006 0.994 32 H 0.026 0.974 33 H -0.051 1.051 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -8.306 -7.623 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.071 0.929 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.034 4.034 8 H 0.039 0.961 9 N -0.268 5.268 10 C -0.109 4.109 11 C 0.078 3.922 12 C -0.566 4.566 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.193 1.193 20 H 0.048 0.952 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.044 0.956 33 H -0.033 1.033 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.786 -7.912 -7.778 12.513 hybrid contribution -0.950 0.414 1.243 1.618 sum 4.835 -7.497 -6.535 11.059 Atomic orbital electron populations 1.21982 0.95683 1.01462 1.01121 1.21710 0.95117 0.99267 0.94813 0.92870 1.22146 0.99849 0.97045 0.95798 1.22285 1.00080 0.97612 0.95118 1.22498 0.96447 0.98900 0.96841 1.22686 0.96564 0.92411 0.91743 0.96079 1.62205 1.32216 1.22560 1.09783 1.22206 0.98652 0.96516 0.93485 1.19512 0.87025 0.91075 0.94551 1.21513 0.94378 1.12063 1.28613 0.92174 1.25903 0.94864 1.00583 0.98336 1.70084 1.02630 1.38239 1.46399 0.85462 0.77728 0.78605 0.78969 1.19357 1.20746 1.19342 0.95173 0.91798 0.91989 0.91267 0.90583 0.89648 0.90967 0.91224 0.91219 0.90222 0.92709 0.97576 0.95618 1.03330 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.53 71.98 0.61 -4.56 16 2 C -0.09 -3.18 2.38 -10.07 -0.02 -3.20 16 3 H 0.05 2.19 7.67 -2.39 -0.02 2.17 16 4 C -0.11 -2.83 6.46 31.32 0.20 -2.63 16 5 C -0.11 -2.55 6.83 31.67 0.22 -2.33 16 6 C -0.11 -3.10 5.38 31.89 0.17 -2.93 16 7 C 0.07 2.78 2.14 45.99 0.10 2.88 16 8 H 0.02 0.84 7.85 -2.39 -0.02 0.82 16 9 N -0.54 -24.64 4.58 -895.30 -4.10 -28.74 16 10 C 0.04 1.61 9.16 127.69 1.17 2.78 16 11 C 0.20 11.28 3.92 85.56 0.34 11.62 16 12 C -0.53 -30.90 8.39 25.60 0.21 -30.68 16 13 H 0.06 3.46 7.16 -2.91 -0.02 3.44 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 16 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H 0.03 1.32 5.86 -2.39 -0.01 1.30 16 21 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.71 7.67 -2.38 -0.02 1.69 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 29 H 0.08 2.65 7.32 -2.39 -0.02 2.64 16 30 H 0.05 2.40 6.67 -2.38 -0.02 2.39 16 31 H 0.01 0.23 8.13 -2.39 -0.02 0.21 16 32 H 0.03 1.50 4.92 -2.39 -0.01 1.49 16 33 H -0.05 -3.11 8.12 -2.39 -0.02 -3.13 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.81 263.97 2.71 -62.10 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.04 Total: 4.89 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.46 Total: -28.53 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -3.82 Total: -85.77 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.81 2.71 -62.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.584 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds