Wall clock time and date at job start Thu Apr 9 2020 14:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.01692 * 2 1 4 4 C 1.54224 * 110.06550 * 121.37148 * 2 1 3 5 5 C 1.54265 * 106.42747 * 119.30627 * 4 2 1 6 6 C 1.54887 * 104.31082 * 23.64464 * 5 4 2 7 7 C 1.54266 * 110.03458 * 238.60465 * 2 1 3 8 8 H 1.08993 * 110.48592 * 335.73150 * 7 2 1 9 9 N 1.46897 * 110.59787 * 98.32483 * 7 2 1 10 10 C 1.46900 * 111.00172 * 177.36251 * 9 7 2 11 11 C 1.46898 * 110.99879 * 301.31528 * 9 7 2 12 12 C 1.50704 * 109.47203 * 170.00207 * 11 9 7 13 13 H 1.08007 * 119.99995 * 359.97438 * 12 11 9 14 14 C 1.37880 * 120.00076 * 179.97438 * 12 11 9 15 15 N 1.31508 * 119.99951 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99722 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47418 * 90.00326 * 16 14 12 18 18 H 1.48509 * 109.46913 * 209.99933 * 16 14 12 19 19 H 1.48496 * 109.47566 * 329.99807 * 16 14 12 20 20 H 1.09002 * 109.47041 * 181.39219 * 1 2 3 21 21 H 1.08998 * 109.47433 * 301.39198 * 1 2 3 22 22 H 1.09001 * 109.46976 * 61.39554 * 1 2 3 23 23 H 1.09008 * 110.13955 * 0.06191 * 4 2 1 24 24 H 1.08993 * 110.08725 * 238.52508 * 4 2 1 25 25 H 1.08997 * 110.48483 * 264.89867 * 5 4 2 26 26 H 1.09005 * 110.48543 * 142.38809 * 5 4 2 27 27 H 1.09003 * 110.75545 * 80.30994 * 6 5 4 28 28 H 1.09002 * 110.75397 * 203.67117 * 6 5 4 29 29 H 1.09000 * 109.47163 * 59.49378 * 10 9 7 30 30 H 1.08997 * 109.47335 * 179.49744 * 10 9 7 31 31 H 1.09004 * 109.47205 * 299.49746 * 10 9 7 32 32 H 1.08994 * 109.47148 * 289.99833 * 11 9 7 33 33 H 1.09002 * 109.47043 * 50.00595 * 11 9 7 34 34 H 0.96999 * 120.00112 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0591 -0.7541 1.2369 5 6 2.8891 -1.9398 0.7029 6 6 3.3144 -1.4994 -0.7199 7 6 2.0584 -0.7550 -1.2371 8 1 1.3147 -1.4660 -1.5966 9 7 2.4225 0.1890 -2.3021 10 6 2.9855 -0.5165 -3.4612 11 6 1.2694 1.0100 -2.6947 12 6 1.7298 2.1216 -3.6022 13 1 2.7747 2.2096 -3.8610 14 6 0.8172 3.0262 -4.1020 15 7 -0.4550 2.9194 -3.7864 16 14 1.3881 4.4045 -5.2262 17 1 1.3334 3.9467 -6.6378 18 1 0.5017 5.5834 -5.0535 19 1 2.7829 4.7792 -4.8811 20 1 -0.3633 -1.0274 0.0250 21 1 -0.3634 0.5353 0.8772 22 1 -0.3633 0.4920 -0.9023 23 1 1.2266 -1.1214 1.8371 24 1 2.6895 -0.0963 1.8350 25 1 2.2794 -2.8421 0.6566 26 1 3.7658 -2.1045 1.3293 27 1 4.1713 -0.8271 -0.6761 28 1 3.5337 -2.3663 -1.3432 29 1 2.2519 -1.2243 -3.8472 30 1 3.2381 0.2050 -4.2381 31 1 3.8842 -1.0538 -3.1582 32 1 0.5435 0.3894 -3.2200 33 1 0.8067 1.4359 -1.8044 34 1 -1.0970 3.5560 -4.1377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306543040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:13 Heat of formation + Delta-G solvation = -16.065099 kcal Electronic energy + Delta-G solvation = -13180.736931 eV Core-core repulsion = 11112.690900 eV Total energy + Delta-G solvation = -2068.046031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.65306 -34.83948 -32.35106 -30.93985 -27.81572 -26.67897 -25.07658 -23.70868 -20.95930 -19.83865 -18.74501 -16.41907 -15.52711 -14.74025 -14.55113 -13.81932 -13.42359 -12.98996 -12.79161 -12.34913 -12.03345 -11.76984 -11.57223 -11.08287 -10.95836 -10.72712 -10.51115 -10.40131 -10.27419 -10.19786 -10.08580 -9.99721 -9.50409 -9.03917 -8.37650 -7.13933 -5.98382 -3.98692 3.33853 3.39982 3.44649 4.46001 4.93464 5.00519 5.07062 5.36266 5.40413 5.73432 5.81599 5.90169 5.97359 5.98859 6.06968 6.16592 6.23818 6.26489 6.33437 6.46851 6.51373 6.60723 6.70258 6.79340 6.86227 6.97122 7.42800 7.45045 7.87115 8.19169 8.30044 8.65634 9.09167 9.64903 11.12430 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050337 B = 0.009613 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.113650 B = 2911.924264 C = 3240.741889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.084 0.916 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.116 4.116 7 C 0.084 3.916 8 H 0.032 0.968 9 N -0.535 5.535 10 C 0.038 3.962 11 C 0.186 3.814 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.045 0.955 32 H -0.014 1.014 33 H 0.043 0.957 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -7.631 6.821 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.025 4.025 8 H 0.050 0.950 9 N -0.259 5.259 10 C -0.111 4.111 11 C 0.061 3.939 12 C -0.545 4.545 13 H 0.080 0.920 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.004 0.996 33 H 0.061 0.939 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.418 -7.217 6.972 10.964 hybrid contribution -0.519 0.229 -1.015 1.163 sum 3.899 -6.988 5.957 9.976 Atomic orbital electron populations 1.22057 0.95386 1.00746 1.02654 1.21764 0.95273 1.00468 0.93114 0.89761 1.22248 0.98938 0.96844 0.97507 1.22295 0.99110 0.97895 0.96743 1.22533 0.98686 0.99064 0.95064 1.22470 0.94651 0.92903 0.92520 0.94991 1.62234 1.34305 1.20968 1.08431 1.22195 0.97371 0.97283 0.94250 1.19890 0.86474 0.91393 0.96143 1.21218 0.94378 1.11033 1.27843 0.92004 1.24977 0.94867 0.97977 0.96843 1.69953 1.01467 1.37184 1.45291 0.86533 0.78629 0.81628 0.80828 1.20837 1.21298 1.19818 0.93749 0.93391 0.90778 0.92303 0.92200 0.92293 0.92250 0.90713 0.92599 0.97421 0.90892 0.93662 0.99591 0.93898 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.54 37.16 0.32 -2.34 16 2 C -0.09 -1.55 2.39 -89.32 -0.21 -1.76 16 3 H 0.08 1.69 7.66 -51.93 -0.40 1.29 16 4 C -0.12 -1.66 6.48 -25.43 -0.16 -1.83 16 5 C -0.12 -1.61 6.82 -25.07 -0.17 -1.79 16 6 C -0.12 -1.79 5.35 -24.74 -0.13 -1.92 16 7 C 0.08 1.57 2.14 -66.06 -0.14 1.43 16 8 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 9 N -0.54 -11.91 4.58 -234.34 -1.07 -12.98 16 10 C 0.04 0.77 9.18 60.06 0.55 1.32 16 11 C 0.19 4.90 3.91 -4.97 -0.02 4.88 16 12 C -0.51 -14.43 8.45 -34.44 -0.29 -14.72 16 13 H 0.06 1.75 7.13 -52.48 -0.37 1.38 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.07 1.55 5.86 -51.93 -0.30 1.24 16 23 H 0.06 0.76 7.69 -51.92 -0.40 0.36 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 1.57 6.75 -51.93 -0.35 1.22 16 31 H 0.04 0.79 7.11 -51.93 -0.37 0.42 16 32 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 33 H 0.04 1.17 4.92 -51.93 -0.26 0.92 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 263.81 15.07 3.98 3.98 Total: -1.00 -29.41 263.81 -7.53 -36.94 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.79 Total: -3.42 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.36 Total: -15.26 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.34 Total: -39.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.41 -7.53 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.880 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds