Wall clock time and date at job start Thu Apr 9 2020 14:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.01692 * 2 1 4 4 C 1.54224 * 110.06550 * 121.37148 * 2 1 3 5 5 C 1.54265 * 106.42747 * 119.30627 * 4 2 1 6 6 C 1.54887 * 104.31082 * 23.64464 * 5 4 2 7 7 C 1.54266 * 110.03458 * 238.60465 * 2 1 3 8 8 H 1.08993 * 110.48592 * 335.73150 * 7 2 1 9 9 N 1.46897 * 110.59787 * 98.32483 * 7 2 1 10 10 C 1.46900 * 111.00172 * 177.36251 * 9 7 2 11 11 C 1.46898 * 110.99879 * 301.31528 * 9 7 2 12 12 C 1.50704 * 109.47203 * 170.00207 * 11 9 7 13 13 H 1.08007 * 119.99995 * 359.97438 * 12 11 9 14 14 C 1.37880 * 120.00076 * 179.97438 * 12 11 9 15 15 N 1.31508 * 119.99951 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99722 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47418 * 90.00326 * 16 14 12 18 18 H 1.48509 * 109.46913 * 209.99933 * 16 14 12 19 19 H 1.48496 * 109.47566 * 329.99807 * 16 14 12 20 20 H 1.09002 * 109.47041 * 181.39219 * 1 2 3 21 21 H 1.08998 * 109.47433 * 301.39198 * 1 2 3 22 22 H 1.09001 * 109.46976 * 61.39554 * 1 2 3 23 23 H 1.09008 * 110.13955 * 0.06191 * 4 2 1 24 24 H 1.08993 * 110.08725 * 238.52508 * 4 2 1 25 25 H 1.08997 * 110.48483 * 264.89867 * 5 4 2 26 26 H 1.09005 * 110.48543 * 142.38809 * 5 4 2 27 27 H 1.09003 * 110.75545 * 80.30994 * 6 5 4 28 28 H 1.09002 * 110.75397 * 203.67117 * 6 5 4 29 29 H 1.09000 * 109.47163 * 59.49378 * 10 9 7 30 30 H 1.08997 * 109.47335 * 179.49744 * 10 9 7 31 31 H 1.09004 * 109.47205 * 299.49746 * 10 9 7 32 32 H 1.08994 * 109.47148 * 289.99833 * 11 9 7 33 33 H 1.09002 * 109.47043 * 50.00595 * 11 9 7 34 34 H 0.96999 * 120.00112 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0591 -0.7541 1.2369 5 6 2.8891 -1.9398 0.7029 6 6 3.3144 -1.4994 -0.7199 7 6 2.0584 -0.7550 -1.2371 8 1 1.3147 -1.4660 -1.5966 9 7 2.4225 0.1890 -2.3021 10 6 2.9855 -0.5165 -3.4612 11 6 1.2694 1.0100 -2.6947 12 6 1.7298 2.1216 -3.6022 13 1 2.7747 2.2096 -3.8610 14 6 0.8172 3.0262 -4.1020 15 7 -0.4550 2.9194 -3.7864 16 14 1.3881 4.4045 -5.2262 17 1 1.3334 3.9467 -6.6378 18 1 0.5017 5.5834 -5.0535 19 1 2.7829 4.7792 -4.8811 20 1 -0.3633 -1.0274 0.0250 21 1 -0.3634 0.5353 0.8772 22 1 -0.3633 0.4920 -0.9023 23 1 1.2266 -1.1214 1.8371 24 1 2.6895 -0.0963 1.8350 25 1 2.2794 -2.8421 0.6566 26 1 3.7658 -2.1045 1.3293 27 1 4.1713 -0.8271 -0.6761 28 1 3.5337 -2.3663 -1.3432 29 1 2.2519 -1.2243 -3.8472 30 1 3.2381 0.2050 -4.2381 31 1 3.8842 -1.0538 -3.1582 32 1 0.5435 0.3894 -3.2200 33 1 0.8067 1.4359 -1.8044 34 1 -1.0970 3.5560 -4.1377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:13 Heat of formation + Delta-G solvation = -34.557552 kcal Electronic energy + Delta-G solvation = -13181.538824 eV Core-core repulsion = 11112.690900 eV Total energy + Delta-G solvation = -2068.847924 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.11665 -36.52301 -34.46345 -32.30567 -29.57796 -28.34353 -26.65018 -25.41755 -22.77009 -21.12992 -20.21337 -18.53895 -17.13504 -16.60811 -16.03973 -15.29560 -15.13455 -14.50947 -14.39622 -14.09804 -13.51236 -13.48738 -13.12232 -12.86320 -12.75234 -12.39411 -12.23612 -11.97971 -11.79698 -11.71779 -11.46826 -11.29611 -11.11619 -11.04307 -10.57999 -8.97838 -8.19257 -6.28828 1.39467 1.40990 1.52713 2.40223 3.12662 3.36344 3.72410 3.81276 4.08535 4.45897 4.46743 4.52025 4.61814 4.63583 4.67118 4.77056 4.85099 4.96755 5.06589 5.10808 5.11997 5.22390 5.28092 5.29125 5.32794 5.46575 5.51706 5.59178 5.68708 6.11264 6.39205 6.74206 6.88166 7.40301 8.91494 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050337 B = 0.009613 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.113650 B = 2911.924264 C = 3240.741889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.053 0.947 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.109 4.109 7 C 0.074 3.926 8 H 0.021 0.979 9 N -0.544 5.544 10 C 0.040 3.960 11 C 0.204 3.796 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.265 1.265 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.004 0.996 30 H 0.054 0.946 31 H 0.080 0.920 32 H -0.051 1.051 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.620 -8.341 7.630 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.071 0.929 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.034 4.034 8 H 0.039 0.961 9 N -0.268 5.268 10 C -0.108 4.108 11 C 0.078 3.922 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.190 1.190 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.099 0.901 32 H -0.033 1.033 33 H 0.044 0.956 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.813 -7.945 7.790 12.553 hybrid contribution -0.970 0.416 -1.252 1.638 sum 4.843 -7.528 6.538 11.085 Atomic orbital electron populations 1.21979 0.95697 1.01458 1.01118 1.21773 0.95097 0.99258 0.94792 0.92885 1.22207 0.99826 0.97042 0.95752 1.22288 1.00084 0.97630 0.95129 1.22504 0.96448 0.98890 0.96838 1.22676 0.96584 0.92429 0.91730 0.96075 1.62201 1.32338 1.22476 1.09750 1.22199 0.98500 0.96750 0.93345 1.19520 0.86996 0.91086 0.94581 1.21543 0.94408 1.11969 1.28551 0.92191 1.25904 0.94873 1.00600 0.98337 1.70087 1.02678 1.38239 1.46357 0.85405 0.78409 0.78190 0.78745 1.19885 1.20643 1.18973 0.91992 0.91804 0.95175 0.90568 0.91252 0.90987 0.89652 0.91196 0.91181 0.97756 0.92675 0.90135 1.03326 0.95599 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 8.54 71.98 0.61 -4.56 16 2 C -0.09 -3.18 2.39 -9.95 -0.02 -3.20 16 3 H 0.05 2.18 7.66 -2.38 -0.02 2.16 16 4 C -0.11 -2.82 6.48 31.44 0.20 -2.62 16 5 C -0.11 -2.56 6.82 31.67 0.22 -2.34 16 6 C -0.11 -3.09 5.35 31.88 0.17 -2.92 16 7 C 0.07 2.78 2.14 45.99 0.10 2.87 16 8 H 0.02 0.84 7.85 -2.39 -0.02 0.82 16 9 N -0.54 -24.64 4.58 -895.31 -4.10 -28.74 16 10 C 0.04 1.64 9.18 127.69 1.17 2.81 16 11 C 0.20 11.27 3.91 85.56 0.33 11.61 16 12 C -0.53 -30.86 8.45 25.60 0.22 -30.64 16 13 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 14 C 0.00 0.04 5.46 84.66 0.46 0.50 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 16 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.03 1.32 5.86 -2.39 -0.01 1.30 16 23 H 0.08 1.71 7.69 -2.38 -0.02 1.69 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.79 7.96 -2.39 -0.02 1.77 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.05 2.40 6.75 -2.39 -0.02 2.38 16 31 H 0.08 2.67 7.11 -2.39 -0.02 2.65 16 32 H -0.05 -3.11 8.12 -2.39 -0.02 -3.13 16 33 H 0.03 1.51 4.92 -2.39 -0.01 1.50 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.93 263.81 2.71 -62.22 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.04 Total: 4.70 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.46 Total: -28.49 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -3.82 Total: -85.77 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.93 2.71 -62.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.665 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds